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RNA-Bloom: a fast and memory-efficient de novo transcript sequence assembler
By LEGE 2218 days agogithub.com - RNA-Bloom is a fast and memory-efficient de novo transcript sequence assembler. It is designed for the following sequencing data types: single-end/paired-end bulk RNA-seq (strand-specific/agnostic) paired-end single-cell RNA-seq...Kmer: a suite of tools for DNA sequence analysis
By BioStar 1813 days agohelp.rc.ufl.edu - More at https://help.rc.ufl.edu/doc/Kmer This also includes: A2Amapper: ATAC, Assembly to Assembly Comparision tool: Comparative mapping between two genome assemblies (same species), or between two different genomes (cross...UniAligner: a parameter-free framework for fast sequence alignment
By Abhi 879 days agogithub.com - UniAligner (formerly, TandemAligner) is the first parameter-free algorithm for sequence alignment that introduces a sequence-dependent alignment scoring that automatically changes for any pair of compared sequences. Classical alignment approaches,...Bourque Lab
The goal of the lab is to understand mammalian genomes using comparative genomic and epigenomic analyses. Areas of interest include: the evolution of regulatory sequences, the role of transposable elements in gene regulation and the impact of genome...4DGenome
By Jitendra Narayan 3684 days ago4dgenome.research.chop.edu - Records in 4DGenome are compiled through comprehensive literature curation of experimentally-derived and computationally-predicted interactions. The current release contains 4,433,071 experimentally-derived and 3,605,176 computationally-predicted...Senior Scientist Computational Biology at NIPGR
Senior Scientist Computational Biology Level 13 ₹ 1,66,378 (Consolidated) 01 (UR) Ph.D. in the area of Computational Biology/Bioinformatics/Biotechnology/Life Sciences with at least 6 years of relevant experience. OR M. Tech with 8...3 PhD positions available in the area of Bioinformatics/Computational Biology at ulster.ac.uk
3 PhD positions available in the area of Bioinformatics/Computational Biology, Machine Learning (ML)/Artificial Intelligence (AI), Biomarker Discovery, Stratified/Personalized Medicine in Mental Health, Diabetes and Multimorbidity. Please see...A computational postdoc position and a bioinformatician position
A computational postdoc position and a bioinformatician position are available in Alessandro Romanel's Lab recently established at the Centre for Integrative Biology (CIBIO) in Trento, Italy. The positions are in the context of an AIRC grant and are...RosettaAntibodyDesign (RAbD): A general framework for computational antibody design
By BioStar 2145 days agowww.rosettacommons.org - RosettaAntibodyDesign (RAbD) is a generalized framework for the design of antibodies, in which a user can easily tailor the run to their project needs. The algorithm is meant to sample the diverse sequence, structure, and binding space of...Mike Ritchie Lab
Mike Ritchie Lab primary research focus is the detection of susceptibility genes for common diseases such as cancer, diabetes, hypertension, and cardiovascular disease, among others. The approaches will involve the development and application of new...
