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Pathway Analysis
Last updated 3709 days ago by Rahul Agarwal Comments (2)Pathway Analysis is usually performed with aim to enrich the genes with their functional information and reveal the underlying biological mechanisms pursue by genes. Pathway Analysis is not only limited to what biological pathways a particular set...
kallisto: a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data
By Jit 2158 days ago Comments (1)pachterlab.github.io - kallisto is a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for...GeneSpring webinar- Uncovering mechanisms of hepatotoxicity on 14 June at 8AM PST
By Yeshodari 2752 days agoUncovering Mechanisms of Hepatotoxicity for High Affinity Antisense Oligonucleotides – 3’ end RNA-seq Profiling Using GeneSpring GX High affinity antisense oligonucleotides (ASOs) containing bicylic modifications (BNA) such as locked...Integrated mRNA and microRNA transcriptome analysis in Strand NGS
By Strand 3410 days agoIntegrated mRNA and microRNA transcriptome analysis in Strand NGSCalling narrow and broad peaks from ChIP-Seq data
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By Strand 3017 days agoLive webinar on Implications of NGS in molecular diagnosis of cancerSurrogate Variable Analysis (SVA)
By Jit 3688 days agoThe sva package contains functions for removing batch effects and other unwanted variation in high-throughput experiment.Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
By BioStar 1765 days agogithub.com - Rcorrector has an accuracy higher than or comparable to existing methods, including the only other method (SEECER) designed for RNA-seq reads, and is more time and memory efficient. With a 5 GB memory footprint for 100 million reads, it can be run...Encode sequencing data freely available to download and use for academic means
By Rahul Agarwal 3919 days ago Comments (3)genome.ucsc.edu - In Encode, regulatory elements investigated via DNA hypersensitivity assays, assays of DNA methylation, and chromatin immunoprecipitation (ChIP) of proteins that interact with DNA, including modified histones and transcription factors, followed...
