Jit
Enthusiast computational biologist with business dream !!!
Our Sponsors
Related items
Smudgeplot: Inference of ploidy and heterozygosity structure using whole genome sequencing data
By Neel 980 days agogithub.com - This tool extracts heterozygous kmer pairs from kmer count databases and performs gymnastics with them. We are able to disentangle genome structure by comparing the sum of kmer pair coverages (CovA + CovB) to their relative coverage (CovB / (CovA +...How to sequence the human genome - Mark J. Kiel
By Rahul Nayak 3808 days agoView full lesson: http://ed.ted.com/lessons/how-to-sequence-the-human-genome-mark-j-kiel Your genome, every human's genome, consists of a unique DNA sequence of A's, T's, C's and G's that tell your cells how to operate. Thanks to technological...Alien Genome !!!
By Jit 3611 days agoGenome sequencing, analysis and expression of Alien genome. Note: This image/cartoon is create only for fun. It has nothing to do with any scientific findings.Scaffolding of a bacterial genome using MinION nanopore sequencing
By Rahul Agarwal 3405 days agowww.nature.com - Second generation sequencing has revolutionized genomic studies. However, most genomes contain repeated DNA elements that are longer than the read lengths achievable with typical sequencers, so the genomic order of several generated contigs cannot...NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore
By Jit 2382 days ago Comments (1)github.com - CoNvex Gap-cost alignMents for Long Reads (ngmlr) is a long-read mapper designed to sensitively align PacBilo or Oxford Nanopore to (large) reference genomes. It was designed to quickly and correctly align the reads, including those spanning...Deepbinner: a signal-level demultiplexer for Oxford Nanopore reads
By Neel 2166 days agogithub.com - Deepbinner is a tool for demultiplexing barcoded Oxford Nanopore sequencing reads. It does this with a deep convolutional neural network classifier, using many of the architectural advances that have proven successful...1mb long DNA with Nanopore technology
By Jit 2508 days agoLongest read of 1mb achievements with NanoporeBFC: a standalone high-performance tool for correcting sequencing errors from Illumina sequencing...
By Jit 2346 days agogithub.com - BFC is a standalone high-performance tool for correcting sequencing errors from Illumina sequencing data. It is specifically designed for high-coverage whole-genome human data, though also performs well for small genomes. The BFC algorithm is a...EAGLER: a scaffolding tool for long reads.
By Jit 2342 days agogithub.com - EAGLER is a scaffolding tool for long reads. The scaffolder takes as input a draft genome created by any NGS assembler and a set of long reads. The long reads are used to extend the contigs present in the NGS draft and possibly join overlapping...Converting a VCF into a FASTA given some reference !
By Jit 2296 days agoconverting a VCF file into a FASTA file given a reference sequence
