genome.sph.umich.edu - vt is a variant tool set that discovers short variants from Next Generation Sequencing data.
https://genome.sph.umich.edu/wiki/Vt
https://github.com/atks/vt
genohub.com - The right sequencing instrument for your study depends on your project goal. Setting aside turnaround time and price, it essentially comes down to the numbers of reads and read length you need for your experiment. Below, we've described and compared...
talks.biogo.googlecode.com - Another good lecture for Illumina sequencing data analysis from
Dan Kortschak, Bioinformatics Group, School of Molecular and Biomedical Science ,The University of Adelaide
www.genome.gov - What is the epigenome?
What does the epigenome do?
What makes up the epigenome?
Is the epigenome inherited?
What is imprinting?
Can the epigenome change?
What makes the epigenome change?
How do changes in the epigenome contribute to...
https://gold.jgi.doe.gov/ - GOLD:Genomes Online Database, is a World Wide Web resource for comprehensive access to information regarding genome and metagenome sequencing projects, and their associated metadata, around the world.
https://gold.jgi.doe.gov/
www.dkfz.de - TelomereHunter is a tool for estimating telomere content from human whole-genome sequencing data. It is designed to take BAM files from a tumor and a matching control sample as input. However, it is also possible to run TelomereHunter with one input...
github.com - HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes (as well as to a single reference genome). Based on an extension of BWT for...