Jit
Enthusiast computational biologist with business dream !!!
Our Sponsors
Related items
Web Apollo: a web-based genomic annotation editing platform
By Jit 3144 days agogenomearchitect.github.io - Web Apollo is the first instantaneous, collaborative genomic annotation editor available on the web. One of the natural consequences following from current advances in sequencing technology is that there are more and more researchers sequencing new...SRBreak: A Read-Depth and Split-Read Framework to Identify Breakpoints of Different Events Inside...
By Jit 2853 days agogithub.com - SRBreak is a read-depth and split-read package written in R for identifying copy-number variants in next-generation sequencing datasets. Note: SBReak was designed to work for multiple samples. It can work for >= 2 samples, but we suggest that...repeat-aware: Repeat aware scaffolding evaluation framework by Igor Mandric
By Jit 2908 days agogithub.com - Genome scaffolding is a classical challenging problem in bioinformatics. It refers to joining assembly contigs into chains (called scaffolds). The join between two contigs A and B is considered correct if: Their relative orientation is...nQuire: A statistical framework for ploidy estimation using NGS short-read data
By Jit 2592 days agogithub.com - nQuire implements a set of commands to estimate ploidy level of individuals from species, where recent polyploidization occurred and intraspecific ploidy variation is observed. Specifically, nQuire uses next-generation sequencing data to distinguish...RosettaAntibodyDesign (RAbD): A general framework for computational antibody design
By BioStar 1994 days agowww.rosettacommons.org - RosettaAntibodyDesign (RAbD) is a generalized framework for the design of antibodies, in which a user can easily tailor the run to their project needs. The algorithm is meant to sample the diverse sequence, structure, and binding space of...How to install Perl modules manually, using CPAN command, and other quick ways
By Jit 4621 days ago Comments (9)Perl Module InstallationPerl Maven tutorial by Gabor Szabo
By Jitendra Narayan 4593 days agoPerl tutorial for beginners and expertsCava Deployment Tools
By Jitendra Narayan 4588 days agowww.cavapackager.com - Cava Packager allows packaging of applications written in Perl. Packaged applications can be distributed without the need for an installation of Perl on the target machine. Cava Packager is currently distributed under a free to use...
Detect the sequence pattern and its location in fasta file with match and mismatches information.
By Jit 4545 days agoThis script is one of my old script to detect some centromeric pattern in chromosomes. User can also control the number of mismatches allowed through command line .. To run: perl centro.plirishgrid: Irish Grid Mapping System
By Jit 4089 days agocode.google.com - Perl module for creating geographic 10km-square maps using either SVG or PNG (with GD library) output format. Originally design to map the location of objects in a 10 km map IrishGrid includes: native support of the Irish Grid System (see...
