Jit
Enthusiast computational biologist with business dream !!!
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NanoPack: visualizing and processing long-read sequencing data
By Jit 2982 days agogithub.com - The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License. The source code can be found at https://github.com/wdecoster/nanopack, together with links to separate scripts and their documentation. The scripts are...ZENBU: a collaborative, omics data integration and interactive visualization system
By BioJoker 2835 days agofantom.gsc.riken.jp - ZENBU is a data integration, data analysis, and visualization system enhanced for RNAseq, ChipSeq, CAGE and other types of next-generation-sequence-tag (NGS) based data. ZENBU allows for novel data exploration through "on-demand" data...PANEV: an R package for a pathway-based network visualization
By Jit 2434 days agogithub.com - PANEV (PAthway NEtwork Visualizer) is an R package set for gene/pathway-based network visualization. Based on information available on KEGG, it visualizes genes within a network of multiple levels (from 1 to n) of interconnected upstream and...Proksee: in-depth characterization and visualization of bacterial genomes
By LEGE 1249 days agohttps://proksee.ca/ - Proksee is an expert system for genome assembly, annotation and visualization. To begin using Proksee, provide a complete genome sequence, sequencing reads or a CGView/Proksee map JSON file.NGenomeSyn: an easy-to-use and flexible tool for publication-ready visualization of syntenic...
By LEGE 759 days agogithub.com - NGenomeSyn: an easy-to-use and flexible tool for publication-ready visualization of syntenic relationships across multiple genomes NGenomeSyn [multiple (N) Genome Synteny], for publication-ready visualization of syntenic relationships of...Leaflet: JavaScript libraries for interactive maps
By Jit 2433 days agorstudio.github.io - Leaflet is one of the most popular open-source JavaScript libraries for interactive maps. Features Interactive panning/zooming Compose maps using arbitrary combinations of: Map...Orione – a web-based framework for NGS analysis in microbiology
By Martin Jones 4461 days agohttp://orione.crs4.it/ - End-to-end NGS microbiology data analysis requires a diversity of tools covering bacterial resequencing, de novo assembly, scaffolding, bacterial RNA-Seq, gene annotation and metagenomics. However, the construction of computational pipelines that...PhyloGrapher - Graph Visualization Tool
By Jitendra Prajapati 3838 days agowww.atgc.org - PhyloGrapher is a program designed to visualize and study evolutionary relationships within families of homologous genes or proteins (elements).PhyloGrapher is a drawing tool that generates custom graphs for a given set of elements. In...Cytoscape
By Anjana 3791 days agohttp://www.cytoscape.org/ - Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of Apps are available for various kinds of problem domains, including bioinformatics, social network...Genome Workbench 2.10.7
By Gudiya Pal 3752 days agoGenome Workbench 2.10.7 is here! New features include added support for local custom BLAST databases and improvements to Tree View.
