Rahul Nayak
A Bioinformatician
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Drawback of Exome Sequencing
By Rahul Agarwal 3859 days agoSmaller Exome datasets were found to be worse performer than those from larger datasets (WGS)
Pathway Analysis
Last updated 3729 days ago by Rahul Agarwal Comments (2)Pathway Analysis is usually performed with aim to enrich the genes with their functional information and reveal the underlying biological mechanisms pursue by genes. Pathway Analysis is not only limited to what biological pathways a particular set...Live Webinar on RNA-Seq Data Analysis on 9 Nov 2016
By Strand 2989 days agoLive Webinar on RNA-Seq Data Analysis Abstract: Strand NGS supports an extensive workflow for the analysis and visualization of RNA-Seq data. The workflow includes Transcriptome / Genome alignment, Differential expression analysis with Statistical...Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
By Jit 2772 days agosourceforge.net - Grinder is a versatile program to create random shotgun and amplicon sequence libraries based on DNA, RNA or proteic reference sequences provided in a FASTA file. Grinder can produce genomic, metagenomic, transcriptomic, metatranscriptomic,...Earth BioGenome Project
By Jit 2436 days agoThe central goal of the Earth BioGenome Project is to understand the evolution and organization of life on our planet by sequencing and functionally annotating the genomes of 1.5 million known species of eukaryotesApollo: A Sequencing-Technology-Independent, Scalable, and Accurate Assembly Polishing Algorithm
By BioStar 1744 days agogithub.com - Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a single run and polish the assemblies of genomes of any size. Described by Firtina et al. (preliminary version...Entire Human Genome Sequencing !
By LEGE 267 days agoCost-effective whole human genome sequencing has revolutionized the landscape of genetic research and personalized medicine by making comprehensive genetic analysis accessible to a wider population. Through advancements in sequencing technologies,...-
Structure of Binary files used for storing sequencing data-bam and sff
Last updated 4153 days ago by Rahul AgarwalMany times bioinformatician needs to parse binary files like bam and sff. Advantage of binary files is that they occupy less space in memory with maximum information content. Link for those who looking for structure of Bam and sff... -
Bioinformatics and Sequencing Courses and Workshops
Last updated 4140 days ago by Rahul Agarwal Comments (2)Swiss Institute of Bioinformatics (SIB) organises lots of bioinformatics courses covering wide range of topics: http://www.isb-sib.ch/education/training-courses.html Canadian bioinformatics also organises various bioinformatics and sequencing... Illuminating next generation sequencing data with Go
By Rahul Agarwal 4142 days agotalks.biogo.googlecode.com - Another good lecture for Illumina sequencing data analysis from Dan Kortschak, Bioinformatics Group, School of Molecular and Biomedical Science ,The University of Adelaide
