Jit
Enthusiast computational biologist with business dream !!!
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Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
By BioStar 1795 days agogithub.com - Rcorrector has an accuracy higher than or comparable to existing methods, including the only other method (SEECER) designed for RNA-seq reads, and is more time and memory efficient. With a 5 GB memory footprint for 100 million reads, it can be run...New RNA Seq tool
By Rahul Agarwal 3907 days ago Comments (4)www.genengnews.com - "By removing the time-consuming step of read mapping, the authors reported, Sailfish able to provide quantification estimates 20–30 times faster than current methods without loss of accuracy." Tool...Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017
By Yeshodari 2630 days agowww.strand-ngs.com - Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017 ORLANDO, USA, Oct 17, 2017/ PRNewswire/ Strand NGS now supports large scale RNA- and small-RNA-Seq and Unique Molecular Identifiers (UMIs) for DNA-, RNA-, and...StringTie Transcript assembly and quantification for RNA-Seq
By Jit 1670 days agoccb.jhu.edu - StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. It uses a novel network flow algorithm as well as an optional de novo assembly step to assemble and quantitate full-length...Exploring RNA Sequence Analysis: Tools for Every Bioinformatician
By Neel 22 days agoThe bioinformatics landscape for RNA sequence analysis is vast, with tools catering to specific needs. Whether you’re studying coding RNAs, non-coding RNAs, or exploring RNA-protein interactions, the right tools can transform your data into...transrate: Understanding your transcriptome assembly
By Neel 2367 days agohibberdlab.com - Transrate is software for de-novo transcriptome assembly quality analysis. It examines your assembly in detail and compares it to experimental evidence such as the sequencing reads, reporting quality scores for contigs and assemblies. This...20th International BioInformatics Workshop on Virus Evolution and Molecular Epidemiology (VEME)
20th International BioInformatics Workshop on Virus Evolution and Molecular Epidemiology (VEME) 9 - 14 August 2015 St. Augustine, Trinidad and Tobago Organiser: Christine Carrington (University of the West Indies - UWI, St. Augustine, Trinidad...Genome Assembly Workshop 2020
By Jit 1228 days agoucdavis-bioinformatics-training.github.io - Our team offers custom bioinformatics services to academic and private organizations. We have a strong academic background with a focus on cutting edge, open source software. We replicate standard analysis pipelines (best practices) when...
