Jit
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MinION_GC: An R script to do some QC on MinION data
By Radha Agarkar 2547 days agogithub.com - Other tools focus on getting data out of the fastq or fast5 files, which is slow and computationally intensive. The benefit of this approach is that it works on a single, small, .txt summary file. So it's a lot quicker than most other things out...R 3.5.0 has been Released!
By Jit 2403 days agoThe latest version of R is a major release! It comes with a ton of new features, including performance and speed improvementsMaking 2D Hilbert Curve
By Jit 2260 days agobioconductor.org - Hilbert curve is a type of space-filling curves that folds one dimensional axis into a two dimensional space, but still keeps the locality. It has advantages to visualize data with long axis in following two aspects: greatly improve...regioneR: an R package for the management and comparison of genomic regions
By Jit 2174 days agogattaca.imppc.org - Regioner is an R package for the management and comparison of genomic regions. It offers a set of function for basic manipulation of region sets extending the functionality of GenomicRanges and a powerful and customizable permutation test framework....chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
By Neel 2053 days agocran.r-project.org - Provides interactive, configurable and elegant graphics visualization of the chromosomes or chromosome regions of any living organism allowing users to map chromosome elements (like genes, SNPs etc.) on the chromosome plot. It introduces a special...alluvial diagram
By Jit 1890 days agocran.r-project.org - Alluvial diagram is a variant of a Parallel Coordinates Plot (PCP) but for categorical variables. Variables are assigned to vertical axes that are parallel. Values are represented with blocks on each axis. Observations are represented...EFS: an ensemble feature selection tool implemented as R-package and web-application
By Jit 1762 days ago Comments (1)http://efs.heiderlab.de/ - The software EFS (Ensemble Feature Selection) makes use of multiple feature selection methods and combines their normalized outputs to a quantitative ensemble importance. Currently, eight different feature selection methods have been integrated in...GeneMates: an R package for Detecting Horizontal Gene Co-transfer between Bacteria Using Gene-gene...
By Rahul Nayak 1722 days agogithub.com - GeneMates is an R package implementing a network approach to identify horizontal gene co-transfer (HGcoT) between bacteria using whole-genome sequencing (WGS) data. It is particularly useful for investigating intra-species HGcoT, where...CRBHits: From Conditional Reciprocal Best Hits to Codon Alignments and Ka/Ks in R
By Shruti Paniwala 1473 days agogitlab.gwdg.de - CRBHits is a coding sequence (CDS) analysis pipeline in R (R Core Team, 2019). It reimplements the Conditional Reciprocal Best Hit (CRBH) algorithm crb-blast and covers all necessary steps from sequence similarity searches, codon alignments to Ka/Ks...Biostats book !
By Abhi 468 days agopractical-stats-med-r.netlify.app - https://practical-stats-med-r.netlify.app/
