Rahul Nayak
A Bioinformatician
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The Genome 10K Project
By Jit 3782 days agohttps://genome10k.soe.ucsc.edu The Genome 10K project aims to assemble a genomic zoo—a collection of DNA sequences representing the genomes of 10,000 vertebrate species, approximately one for every vertebrate genus. The trajectory of cost reduction...GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
By Rahul Agarwal 3440 days ago Comments (1)github.com - GraphMap is a novel mapper targeted at aligning long, error-prone third-generation sequencing data.It is designed to handle Oxford Nanopore MinION 1d and 2d reads with very high sensitivity and accuracy, and also presents a significant...Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
By Jit 2752 days agosourceforge.net - Grinder is a versatile program to create random shotgun and amplicon sequence libraries based on DNA, RNA or proteic reference sequences provided in a FASTA file. Grinder can produce genomic, metagenomic, transcriptomic, metatranscriptomic,...Jabba: Hybrid Error Correction for Long Sequencing Reads
By Jit 2526 days agogithub.com - Jabba is a hybrid error correction tool to correct third generation (PacBio / ONT) sequencing data, using second generation (Illumina) data. Input Jabba takes as input a concatenated de Bruijn graph and a set of sequences: the de Bruijn graph...Entire Human Genome Sequencing !
By LEGE 247 days agoCost-effective whole human genome sequencing has revolutionized the landscape of genetic research and personalized medicine by making comprehensive genetic analysis accessible to a wider population. Through advancements in sequencing technologies,...
Structure of Binary files used for storing sequencing data-bam and sff
Last updated 4133 days ago by Rahul AgarwalMany times bioinformatician needs to parse binary files like bam and sff. Advantage of binary files is that they occupy less space in memory with maximum information content. Link for those who looking for structure of Bam and sff...-
Bioinformatics and Sequencing Courses and Workshops
Last updated 4120 days ago by Rahul Agarwal Comments (2)Swiss Institute of Bioinformatics (SIB) organises lots of bioinformatics courses covering wide range of topics: http://www.isb-sib.ch/education/training-courses.html Canadian bioinformatics also organises various bioinformatics and sequencing... Illuminating next generation sequencing data with Go
By Rahul Agarwal 4122 days agotalks.biogo.googlecode.com - Another good lecture for Illumina sequencing data analysis from Dan Kortschak, Bioinformatics Group, School of Molecular and Biomedical Science ,The University of AdelaideTigers genome sequenced
By Rahul Agarwal 4096 days agoOnly 4.4 percent DNA difference between Tiger and house catsBiggest Human Brain Project (HBP) launched!!!
By Rahul Agarwal 4076 days ago"The Human Brain Project’s is consists of 130 research institutions throughout Europe and coordinated through the Ecole polytechnique fédérale de Lausanne (EFPL)"
