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NovoGraph: building whole genome graphs from long-read-based de novo assemblies
By Jit 2882 days agogithub.com - NovoGraph: building whole genome graphs from long-read-based de novo assemblies An algorithmically novel approach to construct a genome graph representation of long-read-based de novo sequence assemblies. We then provide a proof of...ECTOOLS: Long Read Correction and other Correction tools
By Jit 3196 days agogithub.com - Long Read Correction and other Correction tools This package is a loose collection of scripts. To run the correctionroutine see the section below. Descriptions of the other scriptsare at the bottom of this file. Contact: gurtowsk@cshl.edu In...GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
By Rahul Agarwal 4110 days ago Comments (1)github.com - GraphMap is a novel mapper targeted at aligning long, error-prone third-generation sequencing data.It is designed to handle Oxford Nanopore MinION 1d and 2d reads with very high sensitivity and accuracy, and also presents a significant...Now time is come to revolutionize amino acid sequencing by Nanopore technology
By Rahul Agarwal 4565 days agowww.eurekalert.org - Amino acid sequencing by Nanopore recognition tunneling methodONT assembly and Illumina polishing pipeline
By Jit 3239 days agogithub.com - This pipeline performs the following steps: Assembly of nanopore reads using Canu. Polish canu contigs using racon (optional). Map a paired-end Illumina dataset onto the contigs obtained in the previous steps...Nieduszynski Group
Complete, accurate replication of the genome is essential for life. All chromosomes in eukaryotic cells must be duplicated and then segregated to daughter cells to ensure genetic integrity and produce the large number of cells that make up a...orthodotter: Synteny plots (oxford grid)
By Jit 3345 days agogithub.com - orthodotter -h -------------------------------------------------------------------------------- orthodotter - Plot orthologous genes on an oxford grid. -f <file> : input file, containing orthologous genes, default is stdin...ARCS: scaffolding genome drafts with linked reads
By Rahul Nayak 3136 days agogithub.com - ARCS, an application that utilizes the barcoding information contained in linked reads to further organize draft genomes into highly contiguous assemblies. We show how the contiguity of an ABySS H.sapiensgenome assembly can be increased over...TAREAN: A computational tool for identification and characterization of satellite DNA from...
By Surabhi Chaudhary 3066 days agobitbucket.org - TAndem REpeat ANalyzer -TAREAN – is a computational pipeline for unsupervised identification of satellite repeats from unassembled sequence reads. The pipeline uses low-pass whole genome sequence reads and performs their...
