Abhimanyu Singh
A bioinformatics beginner
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Barrnap: Bacterial ribosomal RNA predictor
By Abhimanyu Singh 3359 days agogithub.com - Barrnap predicts the location of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), mitochondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S). It takes FASTA DNA sequence as input, and write GFF3 as output....iSeqQC: a tool for expression-based quality control in RNA sequencing
By BioStar 2349 days agogithub.com - iSeqQC, an expression-based QC tool that detects outliers either produced due to variable laboratory conditions or due to dissimilarity within a phenotypic group. iSeqQC implements various statistical approaches including unsupervised clustering,...SEASTAR: Systematic Evaluation of Alternative STArt site in RNA
By BioStar 2170 days agogithub.com - SEASTAR (Systematic Evaluation of Alternative STArt site in RNA) is a software package for Transcription Start Site (TSS) identification and quantification using only RNA-seq data. It assembles novel TSSs based only on RNA-Seq data and merges them...Understanding RNA-Seq Normalization Methods: TPM vs. FPKM vs. CPM
By Neel 590 days agoChoosing the right normalization method depends on the specific objectives of your RNA-Seq analysis. TPM’s proportionality and robustness make it the preferred choice for most applications, while CPM serves well for differential expression...Upgrade R 3.0.3
By Rahul Nayak 4518 days agoR 3.0.3 (codename “Warm Puppy) was released several days ago.
