Rahul Nayak
A Bioinformatician
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assemblytics: delta file to analyze alignments of an assembly to another assembly or a reference...
By Jit 2976 days agohttp://assemblytics.com/ - Download and install MUMmer Align your assembly to a reference genome using nucmer (from MUMmer package) $ nucmer -maxmatch -l 100 -c 500 REFERENCE.fa ASSEMBLY.fa -prefix OUT Consult the MUMmer manual if you encounter problems Optional: Gzip...Mulan: Multiple-sequence local alignment and visualization for studying function and evolution
By Jit 2904 days agowww.ncbi.nlm.nih.gov - Mulan: Multiple-sequence local alignment and visualization for studying function and evolution Mulan (http://mulan.dcode.org/), a novel method and a network server for comparing multiple draft and finished-quality sequences to identify functional...Environment for Tree Exploration (ETE) is a Python programming toolkit that assists in the...
By Rahul Nayak 2445 days agopypi.org - The Environment for Tree Exploration (ETE) is a Python programming toolkit that assists in the recontruction, manipulation, analysis and visualization of phylogenetic trees (although clustering trees or any other tree-like data structure are also...MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization
By Neel 1710 days agogithub.com - MitoZ, consisting of independent modules of de novo assembly, findMitoScaf (find Mitochondrial Scaffolds), annotation and visualization, that can generate mitogenome assembly together with annotation and visualization results from HTS raw...ReConPlot: an R package for the visualization and interpretation of genomic rearrangements
By LEGE 966 days agoacademic.oup.com - ReConPlot (REarrangement and COpy Number PLOT), an R package that provides functionalities for the joint visualization of SCNAs and SVs across one or multiple chromosomes. ReConPlot is based on the popular ggplot2 package, thus allowing...
