Evolution of the adaptive immune system Marsupial and monotreme immune genes MHC Diversity and Conservation Marsupial and monotreme genomics Comparative Genomics Genetics of Tasmanian Devil facial tumour disease
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We focus on fundamental questions in genomics, ecology, and evolution. Our methods include fieldwork and labwork, but most of our time is spent analyzing genomics data using computational biology approaches.
Ant / bacteria co-evolution, landscape...
The goal of our research is to interpret and distill this complexity through accurate analysis and modeling of molecular pathways, particularly those in which malfunctions lead to the manifestation of disease. We are inventing integrative methods...
Companies and governments do research and development (R&D/ R'n'D/ R+D) to promote innovation in order to produce new goods or services and/or enhance existing product lines. R&D covers all actions inside an organization aimed at boosting...
github.com - find the resources we provide here useful in getting you set up to analyse and interpret your data.
To reference VESPA: https://peerj.com/preprints/1895/
Documentation is now hosted on ReadTheDocs
github.com - Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs...
When you have both Illumina and Nanopore data, then SPAdes remains a good option for hybrid assembly - SPAdes was used to produce the B fragilis assembly by Mick Watson’s group.
Again, running spades.py will show you the...
In graph theory, a string graph is an intersection graph of curves in the plane; each curve is called a "string". String graphs were first proposed by E. W. Myers in a 2005 publication.