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ChromHMM: Chromatin state discovery and characterization
By Abhimanyu Singh 2776 days agocompbio.mit.edu - ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to discover de novo the major re-occuring combinatorial and spatial...STUDENTSHIP and TRAINEESHIP @ University of Madras
Bioinformatics Infrastructure Facility University of Madras Chennai 600 025 Applications are invited for the STUDENTSHIP and TRAINEESHIP vacancies to carry out project/research work in the DBT - Bioinformatics Infrastructure Facility with...DIAMOND
By Jit 2768 days agogithub.com - DIAMOND is a sequence aligner for protein and translated DNA searches and functions as a drop-in replacement for the NCBI BLAST software tools. It is suitable for protein-protein search as well as DNA-protein search on short reads and longer...
Data Mining in Bioinformatics
Last updated 4149 days ago by Jitendra NarayanData mining, the extraction of hidden predictive information from large databases. Data mining is becoming an increasingly important tool to transform this data into information. It is commonly used in a wide range of profiling practices, such as...Tetra-Nucleotide Analysis
By Jit 2761 days agochunlab.wordpress.com - A tetra-nucleotide is a fragment of DNA sequence with 4 bases (e.g. AGTC or TTGG). Pride et al. (2003) showed that the frequency of tetra-nucleotides in bacterial genomes contain useful, albeit weak, phylogenetic signals. Even though...-
Genomics for Bioinformatician
Last updated 4145 days ago by Jitendra NarayanGenomics is the study of the genomes of organisms. The field includes intensive efforts to determine the entire DNA sequence of organisms and fine-scale genetic mapping efforts. The field also includes studies of intragenomic phenomena such as... Research with help of bioinformatics helpful
By Jit 4132 days agoBioinformatics and endocrinology ...A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
By Abhimanyu Singh 2753 days agowww.sanger.ac.uk - PAGIT addresses the need for software to generate high quality draft genomes. It is based on a series of programs that we developed: ABACAS, that is able to contiguate contigs from a de novo assembly against a closely related reference. IMAGE, an...Five points for bioinformatics software/tools
By Jitendra Narayan 4129 days ago Comments (1)Some five points to keep in mind for bioinformatics software/toolsDownload assemblies from NCBI
By Bulbul 2750 days ago Comments (1)A new “Download assemblies” button is now available in the Assembly database. This makes it easy to download data for multiple genomes without having to write scripts.
