Poonam Mahapatra
Bioinformatics Researcher
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Precision Medicine
By Rahul Agarwal 4140 days agowww.cbsnews.com - Coupling established clinical–pathological indexes with state-of-the-art molecular profiling to create diagnostic, prognostic, and therapeutic strategies precisely tailored to each patient's requirements — hence the term “Precision...Bioinformatics market in India
By Rahul Agarwal 4141 days agowww.kenresearch.com - Key Topics Covered in the Report: The market size of the Indian Bioinformatics Industry , FY’2007-FY’2013 Market segmentation of India bioinformatics industry by application by sectors, FY’2007-FY’2013 Market...Introduction of Epigenomics
By Rahul Agarwal 4097 days agowww.genome.gov - What is the epigenome? What does the epigenome do? What makes up the epigenome? Is the epigenome inherited? What is imprinting? Can the epigenome change? What makes the epigenome change? How do changes in the epigenome contribute to...A-allele of SLC24A5 gene is found to be responsible for variation in skin color of South-East...
By Rahul Agarwal 4059 days agoMore is the A -allele, More is fairer the Skin !!Your stress/depression came from ancestor
By Rahul Agarwal 3887 days agoStress drives changes in the sperm microRNA which carry forward to later generationsGeneProf: analysis of high-throughput sequencing experiment
By Jit 2729 days agowww.geneprof.org - GeneProf is a web-based, graphical software suite that allows users to analyse data produced using high-throughput sequencing platforms (RNA-seq and ChIP-seq; "Next-Generation Sequencing" or NGS): Next-gen analysis for next-gen data! Some of...AIRVF: a filtering toolbox for precise variant calling in Ion Torrent sequencing
By BioStar 2559 days agosourceforge.net - AIRVF that works on flowgram, raw and mapped reads and called variants to reduce artifact-driven false variant calls. Tests on sequencing data of standard reference material showed up to ∼98% reduction of false variants when combined to...ALPACA: A hybrid strategy for assembly of genomic DNA shotgun sequencing reads.
By Seema Singh 2430 days agogithub.com - ALPACA requires Celera Assembler 8.3 or later. It is recommended to build Celera Assembler from source. (Why? The pre-built binaries CA_8.3rc1 and CA8.3rc2 will work for any large data set. Detail paper...HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
By Jit 2415 days agogithub.com - HapCUT2 is a maximum-likelihood-based tool for assembling haplotypes from DNA sequence reads, designed to "just work" with excellent speed and accuracy. We found that previously described haplotype assembly methods are specialized for specific read...
