Jit
Enthusiast computational biologist with business dream !!!
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Software and Tools to detect structure variation with long reads !!
By Archana Malhotra 2964 days agoStructural variation caller tools using long readsKisSplice
By Jit 3176 days agokissplice.prabi.fr - KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It is an exact local transcriptome assembler that allows to identify SNPs, indels and alternative splicing events. It can deal with an arbitrary number...Useful Bioinformatics Tools
By Poonam Mahapatra 3163 days ago Comments (1)molbiol-tools.ca - Collections of few handy tools for bioinformatician http://molbiol-tools.ca/Convert.htmnanofilt: Filtering and trimming of long read sequencing data
By Jit 2462 days ago Comments (1)github.com - Filtering on quality and/or read length, and optional trimming after passing filters.Reads from stdin, writes to stdout. Intended to be used: directly after fastq extraction prior to mapping in a stream between extraction and...ECTOOLS: Long Read Correction and other Correction tools
By Jit 2669 days agogithub.com - Long Read Correction and other Correction tools This package is a loose collection of scripts. To run the correctionroutine see the section below. Descriptions of the other scriptsare at the bottom of this file. Contact: gurtowsk@cshl.edu In...NGS Tutorial
By Jit 3156 days agowww.homolog.us - These tutorials are written for hundreds of bioinformaticians trying to cope with large volume of next-generation sequencing (NGS) data. NGS technologies brought a dramatic shift in the world of sequencing. Merely five years back, genome sequencing...CABOG: Celera Assembler with Best Overlap Graph
By Abhimanyu Singh 2904 days agowww.jcvi.org - CABOG (Celera Assembler with Best Overlap Graph) is scientific software for DNA research. CABOG has been a critical component of many genome sequencing projects. CABOG operates on small genomes such as bacterial as well as large genomes such as...BASE: a practical de novo assembler for large genomes using long NGS reads
By Rahul Nayak 2382 days agogithub.com - new de novo assembler called BASE. It enhances the classic seed-extension approach by indexing the reads efficiently to generate adaptive seeds that have high probability to appear uniquely in the genome. Such seeds form the basis for BASE...
List of visualization tools for genome alignments
Last updated 2640 days ago by Rahul NayakGenome browsers are useful not only for showing final results but also for improving analysis protocols, testing data quality, and generating result drafts. Its integration in analysis pipelines allows the optimization of parameters, which...deepTools
By Martin Jones 3822 days agoUser-friendly tools for the normalization and visualization of deep-sequencing data
