Rahul Nayak
A Bioinformatician
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Synteny and Rearrangement Identifier (SyRI)
By Jit 2132 days agoschneebergerlab.github.io - SyRI is a comprehensive tool for predicting genomic differences between related genomes using whole-genome assemblies (WGA). The assemblies are aligned using whole-genome alignment tools, and these alignments are then used as input to SyRI. SyRI...Reference Sequence Resource!
By LEGE 1634 days agowww.encodeproject.org - The ENCODE project uses Reference Genomes from NCBI or UCSC to provide a consistent framework for mapping high-throughput sequencing data. In general, ENCODE data are mapped consistently to 2 human (GRCH38, hg19) and 2 mouse...Vicoso group
The Vicoso group investigates how sex chromosomes evolve over time, and what biological forces are driving their patterns of differentiation. The Vicoso group is interested in understanding several aspects of the biology of sex chromosomes, and...HIV genome database !
By Rahul Nayak 1507 days agowww.hiv.lanl.gov - HIV resources https://www.hiv.lanl.gov/components/sequence/HIV/search/search.htmlEnvironmental Genomics Group SciLifeLab/KTH Stockholm
By BioStar 1193 days agohttps://github.com/envgen - Useful Metagenomics resourcesCGView.js is a Circular Genome Viewing tool
By LEGE 710 days agohttps://js.cgview.ca/ - CGView.js is a Circular Genome Viewing tool for visualizing and interacting with small genomes. This software is an adaptation of the Java program CGView. CGView.js is the genome viewer of Proksee, an expert system for genome...The Role of lncRNA in Bioinformatics: Unlocking the Secrets of the Genome
By LEGE 456 days agolncRNAs are the hidden gems of the genome, and bioinformatics is the key to unearthing their full potential. As research progresses, lncRNAs could pave the way for novel diagnostics, targeted therapies, and personalized medicine, revolutionizing...NVIDIA and Arc Institute Unveil Evo 2: A Breakthrough AI for DNA Design
By BioStar 379 days agoNVIDIA and the Arc Institute have introduced Evo 2, a groundbreaking AI model designed to understand, predict, and generate DNA sequences. This marks a major advancement in computational biology, offering scientists an unprecedented tool to decode...LAMSA: fast split read alignment with long approximate matches
By Jit 2854 days ago Comments (1)github.com - LAMSA (Long Approximate Matches-based Split Aligner) is a novel split alignment approach with faster speed and good ability of handling SV events. It is well-suited to align long reads (over thousands of base-pairs). LAMSA takes takes the...nanofilt: Filtering and trimming of long read sequencing data
By Jit 2777 days ago Comments (1)github.com - Filtering on quality and/or read length, and optional trimming after passing filters.Reads from stdin, writes to stdout. Intended to be used: directly after fastq extraction prior to mapping in a stream between extraction and...
