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Murray Cox's Genomicus Lab
This group interested in modeling genome dynamics in following topics: ---how genetic variation is distributed within and between individuals, ---determining how this diversity changes over evolutionary time. Hence, Cox group work at the...Bio7: an integrated development environment for ecological modeling, scientific image analysis and...
By Nidhi Rajput 1749 days agohttps://bio7.org/home-2/ - The application Bio7 is an integrated development environment for ecological modeling, scientific image analysis and statistical analysis. The application itself is based on an RCP-Eclipse-Environment (Rich-Client-Platform) which offers a huge...What Junk DNA? It’s an Operating System
By Rahul Agarwal 4113 days agowww.genengnews.com - The report adds to growing experimental support for the idea that all that extra stuff in the human genes, once referred to as “junk DNA,” is more than functionless, space-filling material that happens to make up nearly 98% of the...RNA Sequencing Helps Identify Functional Variants from GWAS
By Andaleeb 4018 days agoschizophreniaforum.org - For Alzheimer’s and other complex disorders, mining the genome for disease-associated variants is no longer the obstacle. The challenge nowadays is figuring out how the identified loci relate to disease. As reported last month in Nature and...
Pathway Analysis
Last updated 3697 days ago by Rahul Agarwal Comments (2)Pathway Analysis is usually performed with aim to enrich the genes with their functional information and reveal the underlying biological mechanisms pursue by genes. Pathway Analysis is not only limited to what biological pathways a particular set...Hoffman Lab
They develop machine learning techniques to better understand chromatin biology. These models and algorithms transform high-dimensional functional genomics data into interpretable patterns and lead to new biological...Barrnap: Bacterial ribosomal RNA predictor
By Abhimanyu Singh 2751 days agogithub.com - Barrnap predicts the location of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), mitochondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S). It takes FASTA DNA sequence as input, and write GFF3 as output....P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
By BioStar 2268 days agowww.fishbrowser.org - P_RNA_scaffolder is a novel scaffolding tool using Pair-end RNA-seq to scaffold genome fragments. The method is suitable for most genomes. The program could utilize Illumina Paired-end RNA-sequencing reads from target speciesies. Our method provides...SEASTAR: Systematic Evaluation of Alternative STArt site in RNA
By BioStar 1562 days agogithub.com - SEASTAR (Systematic Evaluation of Alternative STArt site in RNA) is a software package for Transcription Start Site (TSS) identification and quantification using only RNA-seq data. It assembles novel TSSs based only on RNA-Seq data and merges them...Meta-Transcriptomics: Dynamic World of RNA in Diverse Environments
By Abhi 114 days agoMeta-transcriptomics combines high-throughput sequencing technologies with computational biology to profile the RNA content of a sample.
