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NCBI to assist in Virus Hunting Data Science Hackathon
By BioStar 2669 days agoNCBI Hackathon are pleased to announce the second installment of the SoCal Bioinformatics Hackathon. From January 9-11, 2019, the NCBI will help run a bioinformatics hackathon in Southern California hosted by the Computational Sciences Research...De novo Genome Assembly for Illumina Data
By Rahul Nayak 2238 days agowww.melbournebioinformatics.org.au - Written and maintained by Simon Gladman - Melbourne Bioinformatics (formerly VLSCI) Protocol Overview / Introduction In this protocol we discuss and outline the process of de novo assembly for small to medium sized...BioJupies: Automatically Generates RNA-seq Data Analysis Notebooks
By Rahul Nayak 1903 days agoamp.pharm.mssm.edu - With BioJupies you can produce in seconds a customized, reusable, and interactive report from your own raw or processed RNA-seq data through a simple user interface BioJupies now supports user accounts! Sign in from the top right corner of the page...Fundamentals of Data Visualization by Claus O. Wilke
By Abhi 637 days agoclauswilke.com - The book is meant as a guide to making visualizations that accurately reflect the data, tell a story, and look professional. It has grown out of my experience of working with students and postdocs in my laboratory on thousands of data...New version of Modeller, 9.13
By Radha Agarkar 4405 days agoThe new version of Modeller, 9.13, is now available for download!HISAT2 Index Files Download !
By LEGE 1633 days ago Comments (1)daehwankimlab.github.io - Resource for downloading all the HISAT2 related files Please cite: Kim, D., Paggi, J.M., Park, C. et al. Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype. Nat Biotechnol 37, 907–915...ncbi-datasets-cli -- Quickstart: command line tools !
By Jit 1551 days ago Comments (1)www.ncbi.nlm.nih.gov - Install and use the NCBI Datasets command line tools The NCBI Datasets datasets command line tools are datasets and dataformat . Use datasets to download biological sequence data across all domains of life from...RITA: Rapid identification of high-confidence taxonomic assignments for metagenomic data
By Jit 3022 days agokiwi.cs.dal.ca - RITA is a standalone software package and Web server for taxonomic assignment of metagenomic sequence reads. By combining homology predictions from BLAST or UBLAST with compositional classifications from a Naive Bayes classifier, RITA is able to...BioCircos.js is an open source interactive Javascript library to interactive display biological...
By Jit 2969 days agobioinfo.ibp.ac.cn - BioCircos.js is an open source interactive Javascript library which provides an easy way to interactive display biological data on the web. It implements a raster-based SVG visualization using the open source Javascript...AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
By Jit 2808 days ago Comments (1)github.com - Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data AfterQC can simply go through all fastq files in a folder and then output three folders: good, bad and QC folders, which contains good reads, bad reads and the QC...
