Neel
Bioinformatics Beginner
Our Sponsors
Related items
List of motif discovery tools !
By Neel 2244 days ago Comments (2)A DNA sequence motif represented as a sequence logo for the LexA-binding motif. IDahak: benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.
By BioStar 1738 days agogithub.com - Dahak is a software suite that integrates state-of-the-art open source tools for metagenomic analyses. Tools in the dahak software suite will perform various steps in metagenomic analysis workflows including data pre-processing, metagenome assembly,...Frequently used bioinformatics tools for viral genome analysis !
By Neel 1298 days agoFrequently used bioinformatics tools for viral genome analysis !Bioinformatic tools for pathogens informatics at CVR
By Abhi 216 days agohttps://bioinformatics.cvr.ac.uk/software/Laj: viewing and manipulating the output from pairwise alignment programs
By Abhimanyu Singh 2872 days agowww.bx.psu.edu - Laj is a tool for viewing and manipulating the output from pairwise alignment programs such as blastz. It can display interactive dotplot, pip, and text representations of the alignments, a diagram showing the locations of exons and repeats, and...geck: trio-based comparative benchmarking of variant calls
By Jit 2063 days agogithub.com - Determine the accuracy of our model by comparing the precision and recall of GATK Unified Genotyper and Haplotype Caller on the high-confidence SNPs of the NIST Ashkenazim trio and the two independent Platinum Genome trios. We show that our method...Public Databases for Bioinformatics !
By Jit 1390 days agomitra.stanford.edu - https://www.nature.com/articles/s41467-020-17155-yServer Infrastructure: File Server: dhara: Synology 3614 Storage Appliance 4 Core Xeon 108TB disk storage 10Gb ethernet to SCG3 Access atx: dhara:5000 Has btsync server (try it - its much...Ribbon: Visualizing complex genome alignments and structural variation:
By Jit 2600 days agohttp://genomeribbon.com/ - Ribbon can be used for long reads, short reads, paired-end reads, and assembly/genome alignments. Instructions for each data format are available by clicking on "instructions" in each tab on the right. Local installation: You can install Ribbon...Mash: fast genome and metagenome distance estimation using MinHash
By Jit 2586 days agogithub.com - Mash is normally distributed as a dependency-free binary for Linux or OSX (see https://github.com/marbl/Mash/releases). This source distribution is intended for other operating systems or for development. Mash requires c++11 to build, which is...GIGGLE: a search engine for large-scale integrated genome analysis
By Jit 2558 days agogithub.com - GIGGLE is a genomics search engine that identifies and ranks the significance of genomic loci shared between query features and thousands of genome interval files. GIGGLE (https://github.com/ryanlayer/giggle) scales to billions of intervals and is...
