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Giovanni Parmigiani Lab
Scientific Interests: Models and software for predicting who is at risk of carrying genetic variants that confer susceptibility to cancer. Application to breast, ovarian, colorectal, pancreatic and skin cancer. Statistical methods for the...
NCBI Magic-BLAST
By Jit 2322 days agoncbi.github.io - Magic-BLAST is a tool for mapping large next-generation RNA or DNA sequencing runs against a whole genome or transcriptome. Each alignment optimizes a composite score, taking into account simultaneously the two reads of a pair, and in case of...Sundar Lab
Area of interest Understanding DNA-protein interactions, genome engineering Computational Genomics and Bioinformatics Secondary metabolite biosynthesis, metabolic engineering Ongoing Projects: "Betraying the parasite’s redox system:...Encode sequencing data freely available to download and use for academic means
By Rahul Agarwal 3937 days ago Comments (3)genome.ucsc.edu - In Encode, regulatory elements investigated via DNA hypersensitivity assays, assays of DNA methylation, and chromatin immunoprecipitation (ChIP) of proteins that interact with DNA, including modified histones and transcription factors, followed...Sandelin group
Sandelin group have a deep interest in most biology, but focus on gene regulation and the many areas that are connected with this, including transcriptomics, epigenetics and technological and informatics aspects. The group is both computational...Integrative RNA and ChIP-Seq analysis of regulatory T-cells
By Strand 3428 days agoIntegrative RNA and ChIP-Seq analysis of regulatory T-cellsNational Training on Bioinformatics Computational Tools for Microbial Research Nov 19 to 30, 2013
Agricultural research in modern scientific arena is being represented by proper integration among various research fields of biological, chemical and physical sciences, because this field encompasses many more complexities of biology in nature. In...Webinar on Unique Molecular Identifier (UMI)-powered Ultra-sensitive Variant Calling using Strand...
By Strand 2602 days ago Comments (1)Webinar on Unique Molecular Identifier-powered Ultra-sensitive Variant Calling using Strand NGS - Case Study by Dr. Pandurang Kolekar, Bioinformatics Engineer, Strand Life Sciences Abstract: Unique Molecular Identifiers (UMIs) are short...EMBL Postdoc position in Bacterial Gene Gain Loss
A post-doctoral fellowship is available in the research groups of Nick Goldman (EBI) and John Welch (Genetics Department, Cambridge University) under the EMBL-EBI / Cambridge Computational Biomedical Postdoctoral Fellowship scheme. The project is...RNA-Seq differential expression work flow using DESeq2
By BioStar 1217 days agowww.sthda.com - One of the aim of RNAseq data analysis is the detection of differentially expressed genes. The package DESeq2 provides methods to test for differential expression analysis.
