Rahul Agarwal
I'm a Bioinformatician and Programmer
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VariantBam: Filtering and profiling of next-generational sequencing data using region-specific rules
By Rahul Nayak 2809 days agogithub.com - VariantBam is a tool to extract/count specific sets of sequencing reads from next-generational sequencing files. To save money, disk space and I/O, one may not want to store an entire BAM on disk. In many cases, it would be more efficient to store...NanoPack: visualizing and processing long-read sequencing data
By Jit 2727 days agogithub.com - The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License. The source code can be found at https://github.com/wdecoster/nanopack, together with links to separate scripts and their documentation. The scripts are compatible...Flye: Fast and accurate de novo assembler for single molecule sequencing reads
By Rahul Nayak 2535 days agogithub.com - Flye is a de novo assembler for single molecule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies. It is designed for a wide range of datasets, from small bacterial projects to large mammalian-scale assemblies. The...Opening for RA/extended SRF in Bioinformatics project by DBT at Bose Institute
The institute has evolved over the years into a multi-disciplinary research organization with stress on fundamental research in its pursuit of advancement of knowledge in Science and technology and at the same time developing highly competent and...ngs-bits - Short-read sequencing tools
By Neel 2340 days agogithub.com - Binaries of ngs-bits are available via Bioconda. Alternatively, ngs-bits can be built from sources: Binaries for Linux/macOS From sources for Linux/macOS From sources for WindowsResearch Associate Biotechnology/JRF/Lab. Assistant Indian Institute of Vegetable Research (IIVR)...
F. No.: 2-19/2011-Adm.I Research Associate Biotechnology /JRF / Lab. Assistant recruitment in Indian Institute of Vegetable Research Project: Genomics assisted selection of Solanum chilense introgression lines for enhancing drought...HASLR: a tool for rapid genome assembly of long sequencing reads
By LEGE 2326 days agogithub.com - HASLR is a tool for rapid genome assembly of long sequencing reads. HASLR is a hybrid tool which means it requires long reads generated by Third Generation Sequencing technologies (such as PacBio or Oxford Nanopore) together with Next Generation...Parliament2: Runs a combination of tools to generate structural variant calls on whole-genome...
By Jit 2207 days agogithub.com - Parliament2 identifies structural variants in a given sample relative to a reference genome. These structural variants cover large deletion events that are called as Deletions of a region, Insertions of a sequence into a region, Duplications of a...Smudgeplot: Inference of ploidy and heterozygosity structure using whole genome sequencing data
By Neel 1570 days agogithub.com - This tool extracts heterozygous kmer pairs from kmer count databases and performs gymnastics with them. We are able to disentangle genome structure by comparing the sum of kmer pair coverages (CovA + CovB) to their relative coverage (CovB / (CovA +...ICAR project RA position @ Institute of Bioinformatics (IOB) Bangalore
Applications are invited for the post of Research Associate (RA) in the ICAR project on "Lactation stress associated postpartum anestrus SNP array in buffaloes". We are looking for a motivated candidate for handling Next Generation sequencing data...
