Surabhi Chaudhary
A Bioinformatician
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CrusView
By Jit 3099 days agowww.cmbb.arizona.edu - CrusView is a java based tool for karyotype/genome visualization and comparison of crucifer Species. It also integrates an binary version of KGBassembler and a post-modification step for its assembling result.NAViGaTOR: Network Analysis, Visualization and Graphing Toronto
By Rahul Nayak 3018 days ago142.150.188.236 - NAViGaTOR – Network Analysis, Visualization, & Graphing TORonto is a software system for scaleable visualizing and analyzing networks. The current version, NAViGaTOR 3, increases modularity, improves scaleability, extends input/output...UpSetR: An R Package for the Visualization of Intersecting Sets and their Properties
By BioStar 2808 days agogithub.com - UpSetR generates static UpSet plots. The UpSet technique visualizes set intersections in a matrix layout and introduces aggregates based on groupings and queries. The matrix layout enables the effective representation of associated data,...SynVisio: An Interactive Multiscale Synteny Visualization Tool for McScanX.
By Jit 2320 days agosynvisio.github.io - SynVisio lets you explore the results of McScanX a popular synteny and collinearity detection toolkit and generate publication ready images. SynVisio requires two files to run: The simplified gff file that was used as an...Mulan: MUltiple sequence Local AligNment and conservation visualization tool
By Rahul Nayak 3365 days agomulan.dcode.org - Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "full local" alignment strategy that ensures a recapitulation of evolutionary sequence rearrangements (such as inversions and reshuffling) in any of the species. It...xmatchview: smith-waterman alignment visualization
By Rahul Nayak 3204 days agogithub.com - xmatchview and xmatchview-conifer are imaging tools for comparing the synteny between DNA sequences. It allows users to align 2 DNA sequences in fasta format using cross_match and displays the alignment in a variety of image formats. xmatchview and...ICAR project RA position @ Institute of Bioinformatics (IOB) Bangalore
Applications are invited for the post of Research Associate (RA) in the ICAR project on "Lactation stress associated postpartum anestrus SNP array in buffaloes". We are looking for a motivated candidate for handling Next Generation sequencing data...NanoPack: visualizing and processing long-read sequencing data
By Jit 2979 days agogithub.com - The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License. The source code can be found at https://github.com/wdecoster/nanopack, together with links to separate scripts and their documentation. The scripts are...ZENBU: a collaborative, omics data integration and interactive visualization system
By BioJoker 2832 days agofantom.gsc.riken.jp - ZENBU is a data integration, data analysis, and visualization system enhanced for RNAseq, ChipSeq, CAGE and other types of next-generation-sequence-tag (NGS) based data. ZENBU allows for novel data exploration through "on-demand" data...Circos visualization !
By BioStar 1311 days agowlcb.oit.uci.edu - Circos visualization https://wlcb.oit.uci.edu/modules/index.html
