Rahul Agarwal
I'm a Bioinformatician and Programmer
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Resolving the complexity of the human genome using single-molecule sequencing
By Rahul Agarwal 3892 days agowww.nature.com - The human genome is arguably the most complete mammalian reference assembly yet more than 160 euchromatic gaps remain and aspects of its structural variation remain poorly understood ten years after its completion. The results in this paper...CrusView
By Jit 2886 days agowww.cmbb.arizona.edu - CrusView is a java based tool for karyotype/genome visualization and comparison of crucifer Species. It also integrates an binary version of KGBassembler and a post-modification step for its assembling result.The Breeding API (BrAPI) project
By BioStar 1886 days agohttps://brapi.org/ - The Breeding API (BrAPI) project is an effort to enable interoperability among plant breeding databases. BrAPI is a standardized RESTful web service API specification for communicating plant breeding data. This community driven standard is free to...
Is reference genome necessary for gene expression study in transcriptome sequencing or for variant discovery in genome sequencing?
Rahul Agarwal 4616 days agoTwo major breakthrough!!
By Rahul Agarwal 4569 days agoHigh-value Tannat grape sequenced and $1 syphilis detection testEncode sequencing data freely available to download and use for academic means
By Rahul Agarwal 4377 days ago Comments (3)genome.ucsc.edu - In Encode, regulatory elements investigated via DNA hypersensitivity assays, assays of DNA methylation, and chromatin immunoprecipitation (ChIP) of proteins that interact with DNA, including modified histones and transcription factors, followed...New RNA Seq tool
By Rahul Agarwal 4334 days ago Comments (4)www.genengnews.com - "By removing the time-consuming step of read mapping, the authors reported, Sailfish able to provide quantification estimates 20–30 times faster than current methods without loss of accuracy." Tool...The Genome 10K Project
By Jit 4239 days agohttps://genome10k.soe.ucsc.edu The Genome 10K project aims to assemble a genomic zoo—a collection of DNA sequences representing the genomes of 10,000 vertebrate species, approximately one for every vertebrate genus. The trajectory of cost reduction...
