Rahul Agarwal
I'm a Bioinformatician and Programmer
Our Sponsors
Related items
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
Last updated 3044 days ago by Abhimanyu Singh Comments (1)kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignment for rapid determination of read compatibility with targets) Software (C++) https://pachterlab.github.io/kallisto/ Sailfish Estimation of isoform abundances...AIRVF: a filtering toolbox for precise variant calling in Ion Torrent sequencing
By BioStar 3000 days agosourceforge.net - AIRVF that works on flowgram, raw and mapped reads and called variants to reduce artifact-driven false variant calls. Tests on sequencing data of standard reference material showed up to ∼98% reduction of false variants when combined to...Studentship at Nagaland University
Nagaland University (A Central University Estd. By the Act of Parliament No. 35 of 1989) Lumami 798 627, Nagaland DBT Sponsored ‘Bioinformatics Infrastructure Facility’ Centre Applications in plain paper are invited for the posts of (1)...Heap: a highly sensitive and accurate SNP detection tool for low-coverage high-throughput...
By Jit 2881 days agogithub.com - Heap, that enables robustly sensitive and accurate calling of SNPs, particularly with a low coverage NGS data, which must be aligned to the reference genome sequences in advance. To reduce false positive SNPs, Heap determines genotypes and calls...Senior Scientist (Agricultural Bio-informatics) (One post)
Agricultural Scientists Recruitment Board Qualifications Essential: Doctoral degree in Bio-informatics/ Biotechnology/Molecular Biology and Biotechnology/Life Sciences/ Computer Sciences with specialization in Bio-informatics including relevant...MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
By Rahul Nayak 2859 days agogithub.com - MECAT is an ultra-fast Mapping, Error Correction and de novo Assembly Tools for single molecula sequencing (SMRT) reads. MECAT employs novel alignment and error correction algorithms that are much more efficient than the state of art of aligners and...RStudio
By Jitendra Narayan 4090 days ago Comments (1)http://www.rstudio.com/ - RStudio IDE is a powerful and productive user interface for R. It’s free and open source, and works great on Windows, Mac, and Linux. The developers and expert trainers are the authors of several popular R packages, including ggplot2, plyr,...Manta: rapid detection of structural variants and indels for germline and cancer sequencing...
By Jit 2842 days agogithub.com - Manta calls structural variants (SVs) and indels from mapped paired-end sequencing reads. It is optimized for analysis of germline variation in small sets of individuals and somatic variation in tumor/normal sample pairs. Manta discovers, assembles...seqloc 0.6
By Gudiya Pal 4089 days agowww.stackage.org - The Bio.SeqLoc modules in seqloc are designed to represent positions and locations (ranges of positions) on sequences, particularly nucleotide sequences. My original motivation for writing these packages was handing the locations of genes in...nanofilt: Filtering and trimming of long read sequencing data
By Jit 2779 days ago Comments (1)github.com - Filtering on quality and/or read length, and optional trimming after passing filters.Reads from stdin, writes to stdout. Intended to be used: directly after fastq extraction prior to mapping in a stream between extraction and...
