Rahul Agarwal
I'm a Bioinformatician and Programmer
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Genome Browsers
Last updated 4798 days ago by Rahul Agarwal Comments (2)Genome Browser is the platform/database used for searching and retreiving sequences and annotation of genomes belong to various eukaryotes, prokaryotes, etc. Following are the weblink for different available...BFC: a standalone high-performance tool for correcting sequencing errors from Illumina sequencing...
By Jit 3049 days agogithub.com - BFC is a standalone high-performance tool for correcting sequencing errors from Illumina sequencing data. It is specifically designed for high-coverage whole-genome human data, though also performs well for small genomes. The BFC algorithm is a...
Is reference genome necessary for gene expression study in transcriptome sequencing or for variant discovery in genome sequencing?
Rahul Agarwal 4828 days agoRa assembler - a de novo DNA assembler for third generation sequencing data
By biogeek 3204 days agogithub.com - Integration of the Ra assembler - a de novo DNA assembler for third generation sequencing data developed on Faculty of Electrical Engineering and Computing (FER), Ruder Boskovic Institute (RBI) and Genome Institute of Singapore (GIS). Ra is in...DeepVariant : an analysis pipeline that uses a deep neural network to call genetic variants from...
By Jit 2445 days agogithub.com - DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation...HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
By Jit 3065 days agogithub.com - HapCUT2 is a maximum-likelihood-based tool for assembling haplotypes from DNA sequence reads, designed to "just work" with excellent speed and accuracy. We found that previously described haplotype assembly methods are specialized for specific read...A-allele of SLC24A5 gene is found to be responsible for variation in skin color of South-East...
By Rahul Agarwal 4710 days agoMore is the A -allele, More is fairer the Skin !!Heap: a highly sensitive and accurate SNP detection tool for low-coverage high-throughput...
By Jit 3091 days agogithub.com - Heap, that enables robustly sensitive and accurate calling of SNPs, particularly with a low coverage NGS data, which must be aligned to the reference genome sequences in advance. To reduce false positive SNPs, Heap determines genotypes and calls...-
Genetic Test in India
Last updated 4803 days ago by Rahul Agarwal1.Xcode Life Sciences Pvt. Ltd.6B, Eldorado, 112, Nungambakkam High Road,Nungambakkam, Chennai 600034Tamil Nadu, India 2.Mapmygenome™Royal Demeure,HUDA Techno Enclave,Plot No. 12/2, Sector-1 500 081 Madhapur,HyderabadAP,... 320000 viruses in mammals yet to sequenced in future!!!
By Rahul Agarwal 4780 days ago70 per cent of emerging viral diseases such as HIV/AIDS, West Nile, Ebola, SARS, and influenza, are zoonoses - infections of animals that cross into humans.
