Comment on "Installing Porechop on Ubuntu !"
...ve/ONTdata/allONT/allONT.fasta1,634,477 reads loaded Looking for known adapter sets10,000 / 10,000 (100.0%) Best...1 (reverse) 79.2 80.8 Barcode 12 (reverse) 80.0 83.3 Barcode...(forward) 80.0 76.9 Barcode 31 (forward) 79.2 77.8 Barcode 3...Barcode 90 (forward) 75.0 74.1 Barcode 91 (forward) 73.1 74....2163 days ago
Comment on "List of Bioinformatics Vacancy, Jobs, Opportunity websites"
Bioinformatics jobs at https://www.monster.com/jobs/search/?q=Bioinformatics&intcid=skr_navigation_nhpso_searchMain&jobid=1985086042163 days ago
Comment on "Interview Puzzles for Bioinformatician !"
...sing the Bridge Puzzle Burning Rope Timer Puzzle Heaven or Hell Puzzle 10 Coins Puzzle King and Wine...Bottles 3 Mislabeled Jars Red and Blue Marbles Puzzle Gold Bar Puzzle 100 Doors Puzzle You can als...2176 days ago
Comment on "Various scholarships around the world !!"
Young Scientist Fellowship, Korea 1. Purpose and Background With t...Basic Science (IBS) was founded in 2011 by the Korean government to...entist Fellowship" started in 2016 to play an active role in fo...a PhD (born no earlier than January 1, 1978) * Ph.D. candidates mu...2176 days ago
Comment on "Ancestral sequence reconstruction steps !"
Parallelization of MAFFT for large-scale multiple sequence alignmentshttps://academic.oup.com/bioinformatics/article/34/14/2490/49160992177 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
...t --thread [INT] Number of threads. [1] -l --seed-len [INT] Length o...ween neighboring seeding fragments. [100] -p --max-loci [INT] Maximu...ons that are reserved in a cluster. [10] -R --max-reg [INT] Maximum...idth[INT] Band width for banded-SW. [10] -b --end-bonus [INT] Penalt...2179 days ago
2179 days ago
Comment on "Installing Perl environment on Linux"
...------------ perl-threaded-5.22.0 | 10 11.2 MB bioconda perl-app-cpanm...ting Packagesperl-threaded-5.22.0 | 11.2 MB | #####################...ng and testing Parallel-ForkManager-1.19 ... OKSuccessfully install....cpan.org/authors/id/E/ET/ETHER/URI-1.74.tar.gz ... OKConfiguring U...2183 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...e quick and dirty of what was done: 1 Run minimap: This uses a pre...imap. minimap2 -x ava-pb -t 23 \ 20170911_oly_pacbio_cat.fastq \...70911_oly_pacbio_cat.fastq \ > 20170911_minimap2_pacbio_oly.paf...-run minimap in Step 4 below. awk '$1 ~/S/ {print ">"$2"\n"$3}'...2224 days ago
Comment on "poRe: an R package for the visualization and analysis of nanopore sequencing data"
...sourecforge and we are using version 0.16 Once downloaded, and back a...the Linux command line: R CMD INSTALL poRe_0.16.tar.gz The fastq extracti...;: ./poRe_scripts/old_format/extract2D MAP006-1/MAP006-1_downloads/pass/ >...2231 days ago