Comment on "SPAdes hybrid genome assembly"
..../SPAdes-3.6.2-Linux/bin/spades.py --only-assembler -t 4 -k 21,51,71 -1 SRR2627175_1.f...ta samtools faidx SPAdes_hybrid/contigs.fasta NODE_1_length_4620446_cov_135.169_ID_22238 > single_co...2231 days ago
2232 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...are contiguous (i.e. long) but very noisy (i.e. full of errors) We start with an all against all comparison: minimap -Sw5 -L100 -m0 -t8 reads.fq reads.fq | gzip -1 > reads.paf.gz Then...2232 days ago
Comment on "How to install Perl modules on Mac OS X in easy steps !!"
Our Perl script for drawing requires the GD module(2.41 or later version). Moreover, the GD module requires the following packages. The gd graphics library The PNG graphics libraryThe zlib compression library2246 days ago
Comment on "BINC (BioInformatics National Certification) Website address"
BINC 2018 http://bioinformaticsonline.com/news/view/36281/binc-bioinformatics-national-certification-examination-20182261 days ago
Comment on "Perl one-liner for bioinformatician !!!"
...t awk $ awk '{ print tolower($0) }' input.txt > output.txt perl $ perl -pe '$_= lc($_)' input.txt > output.txt sed $ sed -e 's/\(.*\)/\L\1/' input.txt > output.txt2270 days ago
Comment on "Perl Module Installation"
tar zxf Digest-SHA1-2.13.tar.gz cd Digest-SHA1-2.13 perl Makefile.PL make make test make install2295 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
Useful bioinformatics blog pages 123Bioinformaticshttp://www.123bioinformatics.com Binfalse - Bioinformatics and System Administrationhttp://binfalse.de/ Bioinformatics Zenhttp://www.bioinfor...2299 days ago
Comment on "Basic command-line to run BLAST"
...gov (ftp.ncbi.nlm.nih.gov)... 130.14.250.12, 2607:f220:41e:25...==> SIZE protein.fa.gz ... 12021576==> PASV ... done. =...cns.fr (www.genoscope.cns.fr)|195.83.221.23|:80... connected....o;protein.fa.gz’ saved [10463933] urbe@urbo214b[Human_...2301 days ago
2309 days ago