Comment on "LAMSA: fast split read alignment with long approximate matches"
...ecific split read region. [10] -g --gap-split [INT] Minimum length of gap that causes a split-alignment. [100] -S --soft-clip Use soft clipping for supplementary alignment. [false]...2178 days ago
Comment on "Running Trinity on RNA-seq !"
...as early as possible and account for them in your further data explorations. Perform differential expression analysis. Trinity provides direct support for several DE analysis m...2179 days ago
Comment on "Installing Perl environment on Linux"
...## environment location: /home/urbe/anaconda3/envs/myLocalPerl added / updated specs: - perl - perl-ap...gz ... OKConfiguring Test-Warn-0.36 ... OK==> Found dependencies: Sub::Uplevel--> Working on Sub::Up...2182 days ago
2193 days ago
Comment on "Ten International Scholarships for Indian Biotechnology and Bioinformatics Students"
...the Malaysian Government to attract the best brain from around the world to pursue advanced academic studies in Malaysia. This scholarship aims to support Malaysian Government's ef...2203 days ago
Comment on "SPAdes hybrid genome assembly"
...SPAdes to assemble the data. SPAdes is a swiss-army knife of genome assembly tools, and by default includes read correction. This takes up lots of RAM, so we are going...2230 days ago
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Comment on "Perl one-liner for bioinformatician !!!"
Convert file to lowercase dd $ dd if=input.txt of=output.txt conv=lcase tr $ tr '[:upper:]' '[:lower:]' < input.txt > output.txt awk $ awk '{ print tolower($0) }' input...2270 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
...b.blogspot.com BioToolshttp://bio-tools.org Flags and Lollipopshttp://www.ghastlyfop.com/blog/ Macromolecular Modeling Bloghttp://rosettadesigngroup.com/blog/ Nuevo Blog de BioI...2298 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...index for 702657 target sequence(s)[M::mm_mapopt_update::121.629*3.27] mid_occ =...index for 455528 target sequence(s)[M::mm_mapopt_update::1649.738*17.48] mid_occ...index for 155969 target sequence(s)[M::mm_mapopt_update::3086.956*18.40] mid_occ...2337 days ago