Comment on "Structural variation: the hidden genomic treasure"
...c rearrangement identification software suite. A high-speed next-gen sequencing structural variation caller. GRIDSS calls variants based on alignment-guided positional de Bruijn g...2757 days ago
Comment on "List of popular bioinformatics software/tools"
Mapping single molecule sequencing reads using Basic Local Alignment with Successive Refinement (BLASR) http://bix.ucsd.edu/projects/blasr/3064 days ago
Comment on "Alignment of closely related whole genomes/scaffolds"
Hmmm great link Rahul, You can also try Mugsy: fast multiple alignment of closely related whole genomes http://bioinformatics.oxfordjournals.org/content/27/3/334 In my works, I have a...3073 days ago
Comment on "Bioinformatics Algorithms"
Sequence alignment algorithms http://www.math.utep.edu/Faculty/mleung/bioinformatics/chap0602.pdf3226 days ago
Comment on "Software packages for next gen sequence analysis"
DNAMAN uses fast alignment algorithms to assemble quickly and accurately a large number of overlapping sequences. This could be a nice tutorial for genome assemblies with overlapping sequences http://www.lynnon.com/pc/assembly.html3294 days ago
Comment on "Bio++ : C Language libraries for your biological need"
MafFilter is a program to process genome alignment in the Multiple Alignment Format. Current version is 1.1.2 http://biopp.univ-montp2.fr/forge/maffilter3294 days ago
Comment on "Commercial and public next-gen-seq (NGS) software"
...Assembly with Quality): http://maq.sourceforge.net/maq-man.shtmlSOAP alignment tool: http://soap.genomics.or...rceforge.net/Novoalign: http://www.novocraft.comBWA - Burrows-Wheeler Alignment Tool: http://maq.sourceforge....3676 days ago
Comment on "Bioinformatics Algorithm Demonstrations and Tutorials"
A new trainable, high-speed and biologically relevant alignment algorithms of high-throughput sequencing reads to coding DNA http://nar.oxfordjournals.org/content/early/2014/05/26/nar.gku473.full3683 days ago
Comment on "Bioinformatics Algorithm Demonstrations and Tutorials"
Parallelized pairwise sequence alignment using CUDA on multiple GPUs http://www.biomedcentral.com/1471-2105/10/S7/A33702 days ago
Comment on "Bioinformatics Algorithm Demonstrations and Tutorials"
Original paper of Basic local alignment search tool algorithms http://www.cmu.edu/bio/education/courses/03510/LectureNotes/Altschul1990.pdf3878 days ago