Comment on "Nanopolis: polish a genome assembly"
# Index the draft genome bwa index draft.fa # Align the basecalled reads to the draft sequence bwa mem -x ont2d -t 8 draft.fa reads.fa | samtools sort -o reads.sorted.bam -T re...2156 days ago
Comment on "List of Bioinformatics Vacancy, Jobs, Opportunity websites"
Bioinformatics jobs at https://www.monster.com/jobs/search/?q=Bioinformatics&intcid=skr_navigation_nhpso_searchMain&jobid=1985086042163 days ago
Comment on "Various scholarships around the world !!"
...ment to promote basic sciences in Korea. Twenty-eight Research Centers have been...s to be appointed as independent principal investigators at the prestige institut...ticipating in the IBS research centers are NOT eligible to apply. ht...2176 days ago
Comment on "Ancestral sequence reconstruction steps !"
Parallelization of MAFFT for large-scale multiple sequence alignmentshttps://academic.oup.com/bioinformatics/article/34/14/2490/49160992177 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
...--seed-inv [INT] Distance between neighboring seeding fragments. [10...ratio to cluster two skeletons or alignment records. [0.70] -s --max...match-sc [INT] Match score for SW-alignment. [1] -M --mis-pen [INT]...length of gap that causes a split-alignment. [100] -S --soft-clip Us...2179 days ago
2179 days ago
Comment on "Running Trinity on RNA-seq !"
...kely want to pursue to explore aspects of the biology of your organism based on your assembled transcripts and the input RNA-Seq data. Such studies might include: Quantifying t...2180 days ago
Comment on "Installing Perl environment on Linux"
You migth need to install this sudo conda install -c bioconda perl-app-cpanminus2183 days ago
Comment on "Installing Perl environment on Linux"
...l-ForkManager-1.19.tar.gz ... OKConfiguring Parallel-ForkManager-1.1...ttp://www.cpan.org/authors/id/B/BI/BIGJ/Test-Warn-0.36.tar.gz ... OK...ly installed Module-Build-0.4224Configuring BioPerl-1.007002 ... OK=...orithm-Diff-1.1903.tar.gz ... OKConfiguring Algorithm-Diff-1.1903 .....2183 days ago
Comment on "Installing Perl environment on Linux"
curl -L http://cpanmin.us | perl - --sudo App::cpanminus The above is installing the "zero configuration CPAN modules installer" called cpanm. (Can take several minutes to install - don't break the process) and after - simply: cpanm Foo cpanm Module::One cpanm Another::Module2183 days ago