GAM-NGS: genomic assemblies merger for next generation sequencing
...;blocks) are identified through reads' alignments and stored in a weightedgraph. The merging phase is carried out with the help of this weighted graph that allows an opt...2723 days ago
LIBSVM -- A Library for Support Vector Machines
...t multi-class classification Cross validation for model selection Probability estimates Various kernels (including precomputed kernel matrix) Weighted SVM for unbalanced data Both...2497 days ago
Bio++ : C Language libraries for your biological need
...d models (beta). Molecular evolution tools Parameter estimation under maximum likelihood.Ancestral states reconstructions: Marginal likelihood.(Weighted) substitution mapping.Sequenc...3976 days ago
Genome Assembly Tools and Software - PART2 !!
...ing and frequency estimation methods. This software uses a simple error correction, viral variants assembling based on maximum-bandwidth paths in weighted read graphs and frequency est...2714 days ago
3975 days ago
Commercial and public next-gen-seq (NGS) software
...en Langmead and Cole Trapnell. Linux, Windows, and Mac OS X. BWA - Heng Lee's BWT Alignment program - a progression from Maq. BWA is a fast light-weighted tool that aligns short sequen...3548 days ago
Genetic Algorithms demonstration with word DNA in Perl
...$fitness+= $freqs{$entry} if exists $freqs{$entry}; } return $fitness; } # end of fitness() } # Function to sample from an array of weighted elements # originally writte...2400 days ago