Results for "pacBio"
Blogs
Software and Tools to detect structure variation with long reads !!
...es and types in a genome. While a PacBio de novo assembly re...the most novel SV variants. 8-10X PacBio coverage of single genomes or...sing third generation sequencing (PacBio or Oxford Nanopore). It detec...ural variant and indel caller for PacBio reads Structural variant (SV...2660 days ago
BBTools for bioinformatician !
...ieces and mapped independently. Code: $ mapPacBio.sh -Xmx20g k=7 in=reads.fastq...e generated on the basis of quality; there's a PacBio error model; and all of the r...e generated on the basis of quality; there's a PacBio error model; and all of the r...2323 days ago
Understating pacbio reads name !
m140415_143853_42175_c100635972550000001823121909121417_s1_p0/553/3100_11230 0.99 24 └1┘└─────2─────┘└──3─┘└────────────────4────────────────┘└5┘└6┘└7┘└────8────┘└─9─┘...2042 days ago
CANU genome assembly parameters !
...the error correction process. canu -p test_asmbl \ -d asm_test3 \ genomeSize=2m \ -maxThreads=2 useGrid=false \ -pacbio-raw \ ~/pacbio/dna/sample_reads.fastq.gz Th...1997 days ago
Bioinformatics tools for telomere to telomere assembly !
...ithms) – software designed for processing Iso-Seq data and other long-read transcriptome data (Richard Kuo @GenomeRIK)● pbaa (PacBio Amplicon Analysis) – se...1044 days ago
Steps to find palindrome in genomes !
...the resulting fragments, palindromic regions can be identified. Next-generation sequencing: High-throughput sequencing technologies, such as PacBio and Oxford Nanopore, can gene...475 days ago
Bioinformatic tools for pathogens informatics at CVR
...se. LoReTTA LoReTTA (Long Read Template Targeted Assembler) is a reference assisted de novo assembler specifically designed to deal with PacBio reads generated from viral ge...18 days ago
