Results for "Command Line"
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Installing Perl environment on Linux
By using plenv, you can easily install and switch among different version of Perl. This will be installed under...nal cares. In Linux system, there are two types of outputs when you execute a comm...2349 days ago
BBTools for bioinformatician !
...atched.fq". Specifically, the command means "look for 25-mers in th...ntegration into automated pipelines where you do contaminant remova..., I never use BBDuk2 from the command line. Both have identical capabili...ring it in a table.The bottom line, "first", tracks whether the...2298 days ago
Basic command-line to run BLAST
...hrough a demonstration of the command line, which you may not have seen or...used much before. All of the commands below can copy/pasted. In....protein.faa This grep command uses the c flag, which reports a count of lines with match to the pattern. I...2272 days ago
Popular bioinformatics educational resources !
Followings are the list of popular bioinforma...abase archive, software archive and online resources. Groups.yahoo.com/...ty. All course slides are available online. Cs.iastate.edu/~honavar/com..._courses_tutorials.html A list of on-line course materials and tutorial...2220 days ago
Install ImageMagick from Unix Source
...ck the distribution with this command: tar xvzf ImageMagick.tar.gz...ng for grep that handles long lines and -e... /bin/grepchecking for...r... (cached) gnu./configure: line 9486: AX_COMPILER_FLAGS: command not foundchecking CFLAGS for..../www/api/MagickWand/ftv2vertline.png /usr/local/share/doc/Imag...2174 days ago
- Download this https://github.com/trinityrnaseq/trinityrnaseq/releases/tag/T...ed config.status: executing depfiles commands make[1]: Entering directory...result [-Wunused-result] system(command.c_str());...ed config.status: executing depfiles comm...
2161 days ago
Setting python version as default on Linux
If you have a later version than 2.6 you'll need to set 2.6 as the default...ll next need to execute the following commands: sudo apt-get insta...rnatives --config python This last command will allow you to choose whic...et an error message if you've run the comm...2098 days ago
CANU genome assembly parameters !
...sp;Canu run produces usually high quality assembly, example of a command that was used for testing can...reports generated by the assembler, or calculated using standard UNIX command line tools. More at https://...1973 days ago
- ...quo;s like flex/lex, from the command-line, perfect for text-processing tas...when you’re writing one-liners, something AWK excels at), man...icularly ones that read files line by line and split on delimiters,...u can assign FS either on the command line (-F C) or in your BEGIN # pa...
1863 days ago
List of perl special symbols !
...DROM tray not closed’ $? Exit status from last process $AGRV – name of current file @ARGV – command line arguments $ARGV – special file handle for command line filenames $. – current...1587 days ago
