Structural variation: the hidden genomic treasure
Genome re-sequencing projects have revealed substantial amounts o...and depth of coverage), array-based approaches have proven to be....bioconductor.org/help/course-materials/2010/EMBL2010/Practical-4-Str...wiki/pub/ABI/GenomicsLecture10Materials/structural-variation.pdf htt...2730 days ago
Software and Tools to detect structure variation with long reads !!
Uncovering the connection between genetics and heritable diseases requires an approach tha...uctural variant (SV) and indel caller for PacBio reads based on metho...alling (screenInversions) Quality metric for SV calls based on...2635 days ago
List of GOI approved peer reviewed bioinformatics and computational biology journals
Unfortunately, we now live in a world where the integrity of peer-reviewed journals is bei...usBiochemistry, Genetics and Molecular Biology;Chemistry; Computer Science; Materials Science; Mathematics Wiley I...2594 days ago
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String graph based genome assembly software and tools !
In graph theory, a string graph is an intersecti...are the genome assembly tools based on string graph: 1.SGA (Stri...a set of assembly algorithms based on the FM-index. As the FM-in...nd/or mate pair data to build scaffolds from the contigs. The out...2356 days ago
Bioinformatics tools developed for Oxford Nanopore data analysis !
MinION is the only portable real-time device for DNA and RNA sequencing....ome assembly. Generally, assemblers are based on several different types of...c.jp/ LINKSSoftware tool for long read scaffolding ht.../arq5x/poretools SSPACE-LongReadGenome scaffoldi...2348 days ago
BBTools for bioinformatician !
BBMap.sh Mapping Nanopore reads BBMap.sh has a length cap of 6...bases after position 19, zero-based). Code: $ kmercountexact....ble. It can still do non-kmer-based operations such as quality tr...).metagenome will assign each scaffold a random exponential varia...2298 days ago
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Popular bioinformatics educational resources !
Followings are the list of popular bioinformatics educational resources...s that have extensive online course materials. Bi.../bioactivity/prefacefrm.html A web-based tutorial associated with "Introdu...ials.html A list of on-line course materials and tutorials for bioinformat...2220 days ago
List of motif discovery tools !
In genetics, a sequence motif is a nucleotide or amino-acid seque...d sequence motifs Use this web-based sequence motif visualization...DS -- catalytic site prediction based on 1D signatures of concurren...database presenting experiment-based results...ture Predict protein functions based on...2020 days ago