Understanding reads mapping and flags !
Linear Alignment: An alignment of a read to a single reference sequence that may include insertions, deletions, skips and clipping, but may not include d...1864 days ago
Useful Bioinformatics Analysis Tools !
...mental high-end compressor of FASTQ files. • De...S., QuickProbs – A Fast Multiple Sequence Alignment A...2: indel-sensitive short read mapping, bioRxiv.org, 2019;...sorting allows robust robust mapping of DNA sequencing data, ...890 days ago
List of comparative genomics resources !
3D-GENOMICS -- A Database to Compare Structural and Functional Annotations of Pro...sed sequence tags (ESTs) in different eukaryotic organisms. UniGene Find mapping and expression information fo...704 days ago
Common steps for reads mapping !
...the reference genome: Before mapping reads, the reference genome n...e mapper. Most mappers accept FASTQ or BAM files. Depending on the...be filtered or trimmed before mapping. Run the mapper: The map...lling variants. Overall, mapping reads to a reference genome i...450 days ago
Steps to find palindrome in genomes !
Palindromes are sequences of nucleotides that read the same bac...Nanopore, can generate long reads that can span entire palindromic regions. By mapping these reads to the genome, pa...450 days ago