Results for "r"
Blogs
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2...Read alignment (Bowtie 2) Sort and index alignments (SAMtoo...cks (Nextclade) Individual variant screenshots with annotati...929 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequencing experiments. • Kaw...STQ files. • Roguski, L., Ochoa, I., Hernaez...2):4791–4793, KMC Memory frugal k-mer counter....9(20):2572–2578, VCFShark Compressor of VCF files. &...915 days ago
- Elgg is an open-source and highly customizable framework used for building an online social environment. It provides a simple a...get install apache2 mariadb-server php libapache2-mod-php php...3.3.13.zip Next, move the extracted directory to the Apache...
763 days ago
List of comparative genomics resources !
...ENOMICS -- A Database to Compare Structural and Functional Annotations of Proteins between Sequenced Genom...base of coexpressed gene networks in mammals Find coexpresse...alog Group Database Find eukaryotic paralog/paralogon inform...aM -- orthologous mammalian markers A database of orthologou...729 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
1. *Nick Barton:* - The textbook "Evolution" by Nick Barton, with resources for exploring the literature:...ure 356: 519-520. 2. Green R. E., Reich D., Pääb...A.) 79: 142-45. Testing for selection 1. McDonald &...729 days ago
Finding a mimicry game for teaching on-line and mentioned general resources
Mimicry and other resources Mimicry games: Great Hel...tps://royalsocietypublishing.org/doi/10.1098/rspb.2020.0014)...ractical https://alexis-catherine.github.io/publication/natu...ttps://cbs.umn.edu/populus/overview Drift & Gene Flow...professional online package from Michael Kasumovic: https:/...729 days ago
- SLURM commands The following table shows SLURM commands on the SOE cluster. CommandDescription sbatch Submit batch scripts to the cluster scanc...s-per-node=16 # number of cores #SBATCH --output=slurm.out...The following appreviations are used for the job...
721 days ago
Understanding DUMP files from NCBI Taxonomy database !
*.dmp files are bcp-like dump from GenBank taxonomy database General information. Field terminator is "\t|\t" Row terminator is "\t|\n" &nbs...hidden subtree root flag (1 or 0) -- 1...nbsp; -- id of nodes which is result of merging Citations fi...712 days ago
- https://www.ncbi.nlm.nih.gov/nuccore/OM101125,OM101126,OM101127,OM101128,OM101129,OM101130? Zoonotic Henipavirus https://pubmed.ncbi.nlm.ni...gov/35921459/ https://www.ncbi.nlm.nih.gov/nuccore/OM069646,,OM069567,OM069568,...
684 days ago
Useful link to teach evolution !
Mimicry and other resources Mimicry games: Great Hel...tps://royalsocietypublishing.org/doi/10.1098/rspb.2020.0014)...ractical https://alexis-catherine.github.io/publication/natu...ttps://cbs.umn.edu/populus/overview Drift & Gene Flow...professional online package from Michael Kasumovic: https:/...629 days ago
