Results for "N"
Blogs
Must read paper and books in evolution biology !
1. *Nick Barton:* - The textbook "Evolution" by Nick Barton, with resources for exploring the literature: Barton, N. H...orphism correlate with recombination rate in Drosophila melan...Sensitivity to Virus Resistance. Genetics. 28(6):491-511....632 days ago
Tools for Sequence translation !
BOrf - https://github.com/betsig/borf CodAn - https://github.com/pedronachtigall/CodAn EMBOSS-Sixpack -&...ac.uk/Tools/st/emboss_sixpack/ esl-translate - http://hmmer...neMark/license_download.cgi ORFfinder - https://www.ncbi.nl...599 days ago
- barrnap - https://github.com/tseemann/barrnap CPAT - https://github.com/liguowang/cpat, http://lilab.research.bc...p;https://github.com/gao-lab/CPC2_standalone, http://cpc2.gao-l...NCBI RefSeq - https://www.ncbi.nlm.nih.gov/refseq/ Rfam&...
599 days ago
Tools for Differential expression analysis
apeglm - https://bioconductor.org/packages/release/bioc/html/apeglm.html ashr - https://github.com/...hens999/ashr, https://cran.r-project.org/web/packages/as...oc/html/limma.html MetaCycle - https://cran.r-proj...599 days ago
Interesting Bioinformatics Resources !
1. a reproducible workflow. https://www.youtube.com/watch?v=s3JldKoA0zw This two minute video will change your mind on reproducible r...equencing projects successful https://academic.oup.com/g...ucible Computational Research http://journals.plos.org/p...596 days ago
- DeepMind’s artificial intelligence system AlphaFold2, predicts the 3D structure of a protein based on its amino acid sequence. It...ar-old answer to the problem of protein folding.To read more: https:/...witter: https://twitter.com/rasalsi?lang=en Linkedin: https://www.l...
593 days ago
Bioinformatics tools to explore SSRs in genomes !
There are several bioinformatics tools that can be used to explore Simple Sequence Repeats (SSRs), which are a...e) is a web-based tool that can identify SSRs in DNA sequence...r is a web-based tool that identifies SSRs in both DNA and RN...is a web-based tool that designs PCR primers for SSRs. It can...480 days ago
Chromosome breakpoint - a breakup to remember
...Chromosome breakpoint refers to the physical location where a chromosome is broken and rearranged. Chromosome breakage can o...ethods such as polymerase chain reaction (PCR) and next-gener...y disrupt the function of essential genes or regulatory eleme...480 days ago
Common methods to discover tandem repeats
Tandem repeats are DNA sequences that are repeated in a contiguous manner in the ge...scovering tandem repeats in genomes: Tandem Repeat Finde...tify repeats based on their length, copy number, and overall...thod can be useful for detecting novel tandem repeats and for...478 days ago
Common steps for reads mapping !
Mapping reads to a reference genome is an essential step in many types of genomic analysi...ilable, such as BWA, Bowtie, and HISAT2. Choose a mapper that...ds. Most mappers have their own indexing tools. Prepare...ssing the quality of the mapping, such as the mapping rate, t...478 days ago
