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Tools for Sequence translation !
By Abhinav 536 days ago Comments (1)
BOrf - https://github.com/betsig/borf
CodAn - https://github.com/pedronachtigall/CodAn
EMBOSS-Sixpack - https://www.ebi.ac.uk/Tools/st/emboss_sixpack/
esl-translate - http://hmmer.org/, https://github.com/EddyRivasLab/easel
GeneMarkS-T - http://exon.gatech.edu/GeneMark/license_download.cgi
ORFfinder - https://www.ncbi.nlm.nih.gov/orffinder/ (web server)
PLASS - https://github.com/soedinglab/plass
Prodigal - https://github.com/hyattpd/Prodigal
TransDecoder - https://github.com/TransDecoder/TransDecoder
Comments
Sequence translation is the process of converting a DNA or RNA sequence into its corresponding protein sequence. This is an important step in the analysis of genomic and transcriptomic data. There are several tools available for sequence translation, including:
ExPASy Translate Tool: This is a web-based tool that allows users to translate a DNA sequence into its corresponding protein sequence. It supports several genetic codes and can handle multiple sequences at once.
EMBOSS Transeq: This is a command-line tool that can translate nucleotide sequences into amino acid sequences. It supports several genetic codes and can also perform reverse translation (i.e., convert a protein sequence into its corresponding nucleotide sequence).
BioPython: This is a Python library that provides several tools for bioinformatics analysis, including sequence translation. It supports several genetic codes and provides functions for translating DNA or RNA sequences into protein sequences.
SeqKit: This is a command-line tool that can perform several sequence manipulations, including sequence translation. It supports several genetic codes and can handle multiple sequences at once.
CLC Sequence Viewer: This is a desktop application that provides several tools for sequence analysis, including sequence translation. It supports several genetic codes and provides a user-friendly interface for performing the analysis.
These are just a few examples of the many tools available for sequence translation. The choice of tool depends on the specific requirements of the user, including the input format, the genetic code used, and the type of output required.