Run bash script in Perl program !
BioPerl is a compilation of Perl modules that can be used to build bioinformatics-related Perl scripts. It is used, for example, in the development of source codes, st...680 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J, Ferns B, Goulder P, Nastouli E, Keane JA, Kellam P, Otto TD. Bioinformatics. 201...1089 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional) Variant calling Read alignme...919 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequencing experiments. • Kawulok, J., Deorowicz, S., CoMeta: Classification of Metagenomes Using...906 days ago
754 days ago
Finding a mimicry game for teaching on-line and mentioned general resources
...pered moth game: https://askabiologist.asu.edu/peppered-moths-game/play.html General resources The alw...me.php Mitochondrial Eve: https://projects.ncsu.edu/cals/gn/ex/mit-eve.html Y chromosomes: https://proj...719 days ago
711 days ago
Useful link to teach evolution !
...pered moth game: https://askabiologist.asu.edu/peppered-moths-game/play.html General resources The alw...me.php Mitochondrial Eve: https://projects.ncsu.edu/cals/gn/ex/mit-eve.html Y chromosomes: https://proj...620 days ago
587 days ago
Tools for Differential expression analysis
...nductor.org/packages/release/bioc/html/apeglm.html ashr - https://git...oject.org/web/packages/ashr/index.html consensusDE - http...nductor.org/packages/release/bioc/html/DESeq2.html edgeR -&nbs...nductor.org/packages/release/bioc/html/RUVSeq.html SARTools -&...587 days ago