Frequently used bioinformatics tools for viral genome analysis !
...Keane JA, Kellam P, Otto TD. Bioinformatics. 2015 Jul 15;31(14):2374-6. doi: 10.1093/b...orithms. Salzberg, S. L. et al. Genome Res. 22, 557-67 (2012). KMC: Disk-based...ng large genomes. Kurtz, S. et al. Genome Biol. 5, R12 (2004). R: R: A languag...1089 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant calling evaluation for improved consensus accuracy (Arang Rhie)● PanGenie – algorithm tha...1034 days ago
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Classification of SARS-CoV2 Variant !
...on"—say, another country or a province of a large and populous country.It should differ from its ancestor by at least one nucleotide.At least 95% of its genetic code should h...933 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional) Variant calling Read align...919 days ago
Useful Bioinformatics Analysis Tools !
...p;Bioinformatics, 2019; 35(2):22–234, DSRC Compr...ioinformatics, 2014; 30(15):2213–2215,• ...bsp;2018; 34(16):2748–2756, FQSqueezer Experimental h... Bioinformatics, 2015; 31(10):1569–1576,&bull...905 days ago
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List of comparative genomics resources !
...ntenies A database dedicated to the study of genome conservation. OMA -- the Orthologous MAtrix project Explore orthologous relations across 352 complete genomes. OPTIC...719 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
...ulations of Drosophila pseudoobscura. Genetics. 54:595-609. 1b. Sachidandam et...alton F., 1877 Typical laws of heredity. Nature 15: 492-495- 512-514- 532-533....e VI International Congress of Genetics: 1. pp 356-366. 2. Coyne, J.A., N.H....719 days ago
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