List of comparative genomics resources !
...enomes A data management and analysis system for metagenomes...MBGD -- Microbial genome database for comparative analysis Con...phylogenetic and evolutionary analysis. PhyloPat -- the phyloge...hensive suite of programs and databases for comparative analysis of...732 days ago
Understanding DUMP files from NCBI Taxonomy database !
*.dmp files are bcp-like dump from GenBank taxonomy database General information. Fi...- node id in GenBank taxonomy database parent tax_id --...t node id in GenBank taxonomy database rank -- rank of t...this subtree has no sequence data yet comments -- free-...715 days ago
Tools for Differential expression analysis
apeglm - https://bioconductor.org/packages/release/bioc/html/apeglm.html ashr - https://github.com/stephens999/ashr, https://cran.r-project.org...599 days ago
Interesting Bioinformatics Resources !
1. a reproducible workflow. https://www.y...sense approaches to sharing tabular data alongside publication ht...2666389921002300 4. A Reproducible Data Analysis Workflow with R Markdown, Git...flows is automated using continuous analysis https://www.nature.com/a...596 days ago
Bioinformatics tools to explore SSRs in genomes !
There are several bioinformatics tools that can be used to explore Simple Sequence...esearch questions, you may find that other tools are more appropriate for your analysis.479 days ago
Chromosome breakpoint - a breakup to remember
Chromosome breakpoint refers to the physical location where a c...eakpoints can be detected using a variety of techniques, including cytogenetic analysis, fluorescence in situ hybridi...479 days ago
Common steps for reads mapping !
Mapping reads to a r...step in many types of genomic analysis, such as variant calling and gene expression analysis. Here are some general st...tools. Prepare the read data: The reads should be in a format...-processing: Depending on the analysis being performed, post-process...478 days ago
Steps to find palindrome in genomes !
Palindromes are sequences of nucleotides that read the sam...indromes, but may miss more complex palindromic structures. Dot plot analysis: Dot plot analysis is a graphical method that ca...478 days ago
Calculate the significance of the difference between two trends
To calculate the signi...test such as a t-test or ANOVA (analysis of variance). Here are th...ficant difference. Collect data on the two trends. Make sure that the data is independent, normally distribu...software you use to perform the analysis. The most common methods for...473 days ago
Free Books on Machine Learning and Artificial Intelligent !
An Introduction to Statistical LearningThis b...wishes to use contemporary tools for data analysis. https://hastie.su.domains/ISLR2/ISLRv2_website.pdf Python Data Science HandbookYou’ll...ning, manipulating, and transforming data — or building machine learn...471 days ago