Results for "NGS Data Analysis"
Blogs
List of comparative genomics resources !
...enomes A data management and analysis system for metagenomes...MBGD -- Microbial genome database for comparative analysis Con...phylogenetic and evolutionary analysis. PhyloPat -- the phyloge...hensive suite of programs and databases for comparative analysis of...734 days ago
Understanding DUMP files from NCBI Taxonomy database !
*.dmp files are bcp-like dump from GenBank taxonomy database General information. Fi...- node id in GenBank taxonomy database parent tax_id --...t node id in GenBank taxonomy database rank -- rank of t...this subtree has no sequence data yet comments -- free-...717 days ago
Tools for Differential expression analysis
apeglm - https://bioconductor.org/packages/release/bioc/html/apeglm.html ashr - https://github.com/stephens999/ashr, https://cran.r-project.org...601 days ago
Interesting Bioinformatics Resources !
...Common-sense approaches to sharing tabular data alongside publication https://ww...le/pii/S2666389921002300 4. A Reproducible Data Analysis Workflow with R Markdown, Git...nal workflows is automated using continuous analysis https://www.nature.com/a...598 days ago
Bioinformatics tools to explore SSRs in genomes !
There are several bioinformatics tools that can be used to explore Simple Sequence...esearch questions, you may find that other tools are more appropriate for your analysis.482 days ago
Chromosome breakpoint - a breakup to remember
Chromosome breakpoint refers to the physical location where a chr...sing a variety of techniques, including cytogenetic anal...hain reaction (PCR) and next-generation sequencing (NGS). These techniques can also help i...482 days ago
Common steps for reads mapping !
Mapping reads...step in many types of genomic analysis, such as variant calling and gene expression analysis. Here are some general st...tools. Prepare the read data: The reads should be in a format...-processing: Depending on the analysis being performed, post-process...480 days ago
Steps to find palindrome in genomes !
Palindromes are sequences of nucleotides that read the sam...indromes, but may miss more complex palindromic structures. Dot plot analysis: Dot plot analysis is a graphical method that ca...480 days ago
Calculate the significance of the difference between two trends
To calculate the...test such as a t-test or ANOVA (analysis of variance). Here are th...ificant difference. Collect data on the two trends. Make sure that the data is independent, normally distribu...software you use to perform the analysis. The most common methods for...475 days ago
Free Books on Machine Learning and Artificial Intelligent !
An Introduction to Statistical Learning...wishes to use contemporary tools for data analysis. https://hastie.su.domains/ISLR2/ISLRv2_website.pdf Python Data Science HandbookYou’ll...aning, manipulating, and transforming data — or building machine learn...473 days ago
