List of comparative genomics resources !
3D-GENOMICS -- A Database to Compare Structural and Functional...coDing Orthologous Regions A database resource of developmental...arative Genometrics (CG) -- a database dedicated to biometric co...MBGD -- Microbial genome database for comparative analysis...hensive suite of programs and databas...732 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
1. *Nick Barton:* - The textbook...t sequence of the Neandertal genome. Science 328: 710-722. Quantitative...utionary rate at the molecular level. Science. 217:624-626. 2a. Kern A....010. The Genetic Landscape of a Cell. Science. Speciation 1. Coyne, J....732 days ago
Understanding DUMP files from NCBI Taxonomy database !
*.dmp files are bcp-like dump from GenBank taxonomy database General information. Fi...- node id in GenBank taxonomy database parent tax_id --...t node id in GenBank taxonomy database rank -- rank of t...this subtree has no sequence data yet comments -- free-...715 days ago
Must read paper and books in evolution biology !
1. *Nick Barton:* - The textbook...t sequence of the Neandertal genome. Science 328: 710-722. Quantitative...utionary rate at the molecular level. Science. 217:624-626. 2a. Kern A....010. The Genetic Landscape of a Cell. Science. Speciation 1. Coyne, J....632 days ago
Interesting Bioinformatics Resources !
...sful https://academic.oup.com/gigascience/article/6/11/gix100/455714...on-sense approaches to sharing tabular data alongside publication https://www.sciencedirect.com/science/article/pii/S2666389921002300 4. A Reproducible Data Analysis Workflow with R Markdow...596 days ago
Common steps for reads mapping !
Mapping reads to a reference genome is an essential...that is appropriate for your type of data and research question. I...indexing tools. Prepare the read data: The reads should be in a for...pically involves specifying the input data, r...478 days ago
Calculate the significance of the difference between two trends
To calculate the significance of the difference between two trends, you can use a s...ile H1 might be that there is a significant difference. Collect data on the two trends. Make sure that the data is...473 days ago
Free Books on Machine Learning and Artificial Intelligent !
...hes to use contemporary tools for data analysis. https://hastie.su..../ISLR2/ISLRv2_website.pdf Python Data Science HandbookYou’ll learn...g, manipulating, and transforming data — or building machine lear...tps://jakevdp.github.io/PythonDataScienceHandbook/ Dive into Deep Lear...471 days ago
Bioinformatic tools for pathogens informatics at CVR
Novel sequencing and analytical approaches focused on...ped @ CVR. DIGS The database-integrated genome-screeni...silico screening of sequence databases using BLAST in combinati...ly tailored towards viral HTS data sets and the analysis of the...able next generation sequence data se...20 days ago