Basic Structure of Snakemake Pipeline Run !
...t the workflow will use. scripts = directory for storing python scripts called by the snakemake formula. config.json = json format file with extra parameters for our snakemake fil...986 days ago
Illumina based assembly pipeline steps !
...(SnpEff, SnpSift) Consensus assessment report (QUAST) Lineage analysis (Pangolin) Clade assignment, mut...mming (Cutadapt; amplicon data only) Choice of multiple assembly tools (SPAdes || Unicycler || minia)...929 days ago
Useful Bioinformatics Analysis Tools !
..., 2016; 6(33964): FaStore Compressor of FASTQ files. • Roguski, L., Ochoa, I., Hernaez, M., Deorowicz, S., FaStore - a space-saving solution for raw seq...915 days ago
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List of comparative genomics resources !
...bovine genomics data. COMPARE -- a multi-organism system...of putative orthologous gene pairs from man, mouse, rat, fugu...pecies genomes Search and compare 12 new and old Drosophila g...OPTIC -- orthologous and paralogous transcripts in clades...729 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
..., J. A., Goldstein, D. B., & Patel, N. H. (2007). Evolution....ng Harbor Laboratory Press. - Papers from a course named "Clas...i Y. I., Pritchard J. K., 2017 An expanded view of complex traits:.... 7:1-52. 2. Trivers, R. L. 1974 Parent-offspring conflict. Ameri...729 days ago
Finding a mimicry game for teaching on-line and mentioned general resources
...al Eve: https://projects.ncsu.edu/cals/gn/ex/mit-eve.html Y chromosomes: https://projects.ncsu.edu/cals/gn/ex/y-chrom.html A professional online package from Michael Kasumovic:...729 days ago
721 days ago
Understanding DUMP files from NCBI Taxonomy database !
...node id in GenBank taxonomy database parent tax_id -- parent node id in GenBank taxono...or 0) -- 1 if node inherits genetic code from parent mitochondrial gen...ter ("\\"). taxid_list -- list of node ids separated by a single space712 days ago
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