Software and Tools to detect structure variation with long reads !!
...from a combination of sequencing platforms. There are two pieces of software in this release: (1) a pre-processor that takes machineformat (.m5) BLASR files, and (2) MultiBreak-SV....2642 days ago
Bioinformatics tools developed for Oxford Nanopore data analysis !
...ers for Oxford Nanopore MinION long reads LQSDALIGNER, Celera OLC Nanocorrect, Nanopolish correctorhttps://github.com/jts/nanopolish PBcRHGAP or BLASR, Celera OLC PBcR correctorhtt...2354 days ago
WGS Celera Assembler version 8.3rc2
...Biosciences/pbdagcon PBDAGCON], [https://github.com/PacificBiosciences/BLASR BLASR], and parts of the [https://g...2,4K Apr 10 11:41 asmToAGP.pl-rwxrwxr-x 1 urbe urbe 7,6M Apr 10 11:41 blasr-rwxrwxr-x 1 urbe urbe 1,6M Ap...2616 days ago
proovread : large-scale high-accuracy PacBio correction through iterative short read consensus
...upports various types of dat HiSeq/MiSeq (100-500bp) Unitigs 454, ... proovread maps high coverage data to pacbio reads (bwa mem, blasr, daligner) in multiple iterat...2346 days ago
2185 days ago
Installing pb-assembly on Linux !
...blas: 1.0-mkl blasr: 5.3.2-hac9d22c_3 bioconda blasr_libcpp: 5.3.1-hac9...2068 days ago
Setting up falconUnzip conda environments for genome assembly !
...blas: 1.0-mkl blasr: 5.3.2-hac9d22c_3 bioconda blasr_libcpp: 5.3.1-hac9...2024 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...ormat. [auto] -L, --out-fmt STR Format in which to output results. Options are: sam - Standard SAM output (in normal and '-w overlap' modes). m5 - BLASR M5 format. [sam] -I, --index-...2326 days ago
Comment on "List of popular bioinformatics software/tools"
Mapping single molecule sequencing reads using Basic Local Alignment with Successive Refinement (BLASR) http://bix.ucsd.edu/projects/blasr/3044 days ago