Results for "PacBio RSII"
Blogs
Software and Tools to detect structure variation with long reads !!
Uncovering the connection between genetics and heritable diseases...nd types in a genome. While a PacBio de novo assembly re...most novel SV variants. 8-10X PacBio coverage of single genomes or...third generation sequencing (PacBio or Oxford Nanopore). It detec...variant and indel caller for PacB...2654 days ago
BBTools for bioinformatician !
BBMap.sh Mapping Nanopore reads BBMap.sh has a length cap of 6kbp. R...mapped independently. Code: $ mapPacBio.sh -Xmx20g k=7 in=reads.fastq...ed on the basis of quality; there's a PacBio error model; and all of the r...ed on the basis of quality; there's a PacB...2317 days ago
Understating pacbio reads name !
m140415_143853_42175_c100635972550000001823121909121417_s1_p0/553/3100_11230 0.99 24 └1┘└─────2─────┘└──3─┘└────────────────4────────────────┘└5┘└6┘└7┘└────8────┘└─9─...2036 days ago
CANU genome assembly parameters !
Choose the appropriate parameters to run Canu and run it. The assembly will take about an hour. You can use two...sm_test3 \ genomeSize=2m \ -maxThreads=2 useGrid=false \ -pacbio-raw \ ~/pacb...1991 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant calling evaluation for improved consensus accuracy (Aran...her long-read transcriptome data (Richard Kuo @GenomeRIK)● pbaa (PacB...1038 days ago
Steps to find palindrome in genomes !
Palindromes are sequences of nucleotides that read the same backward as forward. They can be pre...Next-generation sequencing: High-throughput sequencing technologies, such as PacB...469 days ago
Bioinformatic tools for pathogens informatics at CVR
Novel sequencing and analytical approaches focused on studying viruses and virus-host interactions. Below...r) is a reference assisted de novo assembler specifically designed to deal with PacB...12 days ago
