Multi-CAR: a tool of contig scaffolding using multiple references
...oes not require prior knowledge concerning phylogenetic relationships among the draft and reference genomes and libraries of paired-end reads. To validate Multi-CAR, we have tested it...2300 days ago
DUPCAR: Reconstructing Contiguous Ancestral Regions with Duplications
...d to reconstruct the ancestral orders by connecting genes into contiguous regions based on predicted adjacencies. Computer simulation was used to validate the algorithm. We also applie...2224 days ago
EXCAVATOR: detecting copy number variants from whole-exome sequencing data
...re with a novel heterogeneous hidden Markov model algorithm and a calling method that classifies genomic regions into five copy number states. We validate EXCAVATOR on three datasets a...1996 days ago
SeqCAT: Sequence Conversion and Analysis Toolbox
...aily laboratory work, SeqCAT simplifies sequence coordinate conversion. Extract gene and transcript information, manipulate sequences, and easily validate complex genetic events such a...8 days ago