Results for "determine"
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UCSC Genome Browser and Blat software !
...ry contains Genome Browser and Blat application binaries built for standalone command-line use on various supported Linux and UNIX platforms. To determine which set of binaries to down...3051 days ago
- ...refix Type ./minia for a quick explanation of the parameters. For more information, refer to the manual. KmerGenie can be used to determine the best k-mer size, minimum...
2757 days ago
- ...thout the help of a reference genome. DIAL works even when the depth of coverage is insufficient for de novo assembly, and it can be extended to determine small insertions/deletions. O...
2673 days ago
MeDuSa: a multi-draft based scaffolder
...er), an algorithm for genome scaffolding. MeDuSa exploits information obtained from a set of (draft or closed) genomes from related organisms to determine the correct order and orienta...2324 days ago
- ...l using machine learning approach based on branch features, PERGA can determine the correct extension in 99.7...PERGA will try to extend the contigs by all feasible nucleotides and determine if these multiple extensions...
2212 days ago
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
...e "comp". In addition, KAT contains a python script for analysing the mathematical distributions present in the K-mer spectra in order to determine how much content is present i...2033 days ago
- ...transcript-level quantification. Specifically, RapClust relies on the fragment equivalence classes computed by these tools in order to determine how seqeunce is shared across...
2091 days ago
Purge Haplotigs: Pipeline to help with curating heterozygous diploid genome assemblies
...l'. The pipeline uses mapped read coverage and Minimap2 alignments to determine which contigs to keep for the...agged contig matches, juxtaposed with read-coverage, to help the user determine the proper assignment of any...2018 days ago
- ...led transcriptomes using sequencing reads to determine the true origin of every tran...quencing service facility.Our approach first determines a subset of transcripts that...too close between focal and alien samples to determine the true origin of the transc...
1996 days ago
geck: trio-based comparative benchmarking of variant calls
Determine the accuracy of our model by comparing the precision and recall of GATK Unified Genotyper and Haplotype Caller on the high-confidence SNPs of the NIST Ashkenaz...1864 days ago
